PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G47850.3
Common NameF17A22.24
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 468aa    MW: 50040.5 Da    PI: 8.8375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G47850.3genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-114872327
                 S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  + C +++rtG C yG+rC+++H++
  AT2G47850.3 48 APDCAYYMRTGVCGYGNRCRYNHPR 72
                 589********************96 PP

2zf-CCCH40.44.9e-1391117127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tGtCk+G++CkF+H++
  AT2G47850.3  91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117
                  5799*********************96 PP

3zf-CCCH35.12.2e-11141163527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C+++++tG+Ck+G +CkF+H++
  AT2G47850.3 141 ECSYYLKTGQCKFGITCKFHHPQ 163
                  7********************97 PP

4zf-CCCH37.83.2e-12290316127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+++++tG Ck+G +CkF+H++
  AT2G47850.3 290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316
                  5799*********************96 PP

5zf-CCCH32.41.5e-10337362227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +  +C f+ ++G+Ck+G++CkF H++
  AT2G47850.3 337 GVQRCTFYVQNGFCKFGSTCKFDHPM 362
                  6779********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8824573IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-54572IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-55172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5390118IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-790117IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1091117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-691118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-595116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732136164IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5140164IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5289316IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6294318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5295317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23335363IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5335362IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6337366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5341361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC  60
GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL KTGTCKFGAS CKFHHPKNAG  120
GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ CKFGITCKFH HPQPAGTTVP PPPASAPQFY  180
PSVQSLMPDQ YGGPSSSLRV ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL  240
SPGAQHAVGA TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK  300
TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC KFGSTCKFDH  360
PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST ELIAGGAKDA YMTGVPTSRS  420
TSNISAGLIF SQSGGSIPFS ELQLSSQSSL PLTGSRITRQ GREIRRSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.210060.0bud| flower| root| seed| silique| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306908080.0
Genevisible266506_at0.0
Expression AtlasAT2G47850-
AtGenExpressAT2G47850-
ATTED-IIAT2G47850-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G47850.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G47850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182306.20.0zinc finger CCCH domain-containing protein 32
RefseqNP_001078078.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGAT2G47850.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]