PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G45680.1
Common NameF17K2.21, TCP9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 356aa    MW: 37630.8 Da    PI: 10.0733
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G45680.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.7e-3769161295
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                  + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++    +   +  + +++++   ++
  AT2G45680.1  69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADSDMGEN 161
                  57999***********************************************************8888844421..1111111111112222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3074155IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL  60
APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE  120
NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD  180
AVSASSGLAP IATTTTIQPP QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ  240
IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR  300
ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.245760.0floral meristem| flower| root| seed| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible267515_at0.0
Expression AtlasAT2G45680-
AtGenExpressAT2G45680-
ATTED-IIAT2G45680-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Function -- GeneRIF ? help Back to Top
  1. TCP proteins are involved in the orchestrated regulation of ICS1 expression, with TCP8 and TCP9 being verified as major representatives.
    [PMID: 25702611]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G45680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
BioGRIDAT4G18170, AT4G27330
IntActSearch O64647
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G45680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0036800.0AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence.
GenBankAF3706060.0AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds.
GenBankAK2215990.0AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23.
GenBankAY0562140.0AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankAY1139810.0AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182092.10.0TCP family transcription factor
SwissprotO646470.0TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A178VZF40.0A0A178VZF4_ARATH; TCP9
STRINGAT2G45680.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Representative plantOGRP31781129
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ruuska SA,Girke T,Benning C,Ohlrogge JB
    Contrapuntal networks of gene expression during Arabidopsis seed filling.
    Plant Cell, 2002. 14(6): p. 1191-206
    [PMID:12084821]
  3. Noh SJ,Kwon CS,Oh DH,Moon JS,Chung WI
    Expression of an evolutionarily distinct novel BiP gene during the unfolded protein response in Arabidopsis thaliana.
    Gene, 2003. 311: p. 81-91
    [PMID:12853141]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Shikata M, et al.
    Characterization of Arabidopsis ZIM, a member of a novel plant-specific GATA factor gene family.
    J. Exp. Bot., 2004. 55(397): p. 631-9
    [PMID:14966217]
  6. Koroleva OA,Tomlinson ML,Leader D,Shaw P,Doonan JH
    High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.
    Plant J., 2005. 41(1): p. 162-74
    [PMID:15610358]
  7. Vergnolle C, et al.
    The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions.
    Plant Physiol., 2005. 139(3): p. 1217-33
    [PMID:16258011]
  8. Aguilar-Martínez JA,Poza-Carrión C,Cubas P
    Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
    Plant Cell, 2007. 19(2): p. 458-72
    [PMID:17307924]
  9. L
    Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis.
    Plant Cell, 2008. 20(4): p. 947-68
    [PMID:18424613]
  10. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  11. Klopffleisch K, et al.
    Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.
    Mol. Syst. Biol., 2011. 7: p. 532
    [PMID:21952135]
  12. Danisman S, et al.
    Arabidopsis class I and class II TCP transcription factors regulate jasmonic acid metabolism and leaf development antagonistically.
    Plant Physiol., 2012. 159(4): p. 1511-23
    [PMID:22718775]
  13. Davi
    Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height.
    Curr. Biol., 2014. 24(16): p. 1923-8
    [PMID:25127215]
  14. We
    Convergent targeting of a common host protein-network by pathogen effectors from three kingdoms of life.
    Cell Host Microbe, 2014. 16(3): p. 364-75
    [PMID:25211078]
  15. Chen GH,Sun JY,Liu M,Liu J,Yang WC
    SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis.
    J Genet Genomics, 2014. 41(12): p. 617-25
    [PMID:25527103]
  16. Wang X, et al.
    TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana.
    Plant J., 2015. 82(1): p. 151-62
    [PMID:25702611]