PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G42440.1
Common NameASL15, LBD17, MHK10.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 244aa    MW: 27387.3 Da    PI: 6.4339
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G42440.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-3971071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrr+C+k+Cv+apyf++eq +++fa++h++FGasn +kll++lp e+r++a+++++yeA+ar +dP+yG+v++i++lqqq+ +l+++l+ l
  AT2G42440.1   7 PCGACKFLRRRCVKGCVFAPYFCHEQgASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEIL 104
                  7*************************89*********************************************************************9 PP

       DUF260  98 kee 100
                  k++
  AT2G42440.1 105 KQQ 107
                  997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4326108IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRRCVK GCVFAPYFCH EQGASHFAAI HQVFGASNAS KLLSHLPMED  60
RREAATTIYY EAQARRQDPI YGCVSHIFSL QQQVVNLQTQ LEILKQQATQ SMMAIDSPSI  120
ENPNYYQDTK PQYLQESHDL HHHHLTTSNC QTEQNSDLKN IMTSCYHQME IETTPFTGAG  180
GDTMAGSYYY NSSSGCSEEL KSVSTNGEFS KYSELDQHLT NTFNQYRHGG NNLISESLGY  240
ITYS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402546260.0
Genevisible257386_at0.0
Expression AtlasAT2G42440-
AtGenExpressAT2G42440-
ATTED-IIAT2G42440-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G42440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G42440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738480.0AB473848.1 Arabidopsis thaliana ASL15 mRNA for ASYMMETRIC LEAVES2-like 15 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850370.40.0LOB domain-containing protein 17
SwissprotQ9SLB60.0LBD17_ARATH; LOB domain-containing protein 17
TrEMBLD7LI621e-149D7LI62_ARALL; Putative uncharacterized protein
STRINGAT2G42440.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MalvidsOGEM10828359
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Okushima Y, et al.
    Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.
    Plant Cell, 2005. 17(2): p. 444-63
    [PMID:15659631]
  5. Laplaze L, et al.
    GAL4-GFP enhancer trap lines for genetic manipulation of lateral root development in Arabidopsis thaliana.
    J. Exp. Bot., 2005. 56(419): p. 2433-42
    [PMID:16043452]
  6. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]