PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G41900.1
Common NameOXS2, T6D20.20, TZF7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 716aa    MW: 77992.1 Da    PI: 6.3083
Description CCCH-type zinc finger protein with ARM repeat domain
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G41900.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07306326526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  AT2G41900.1 306 PCPDFRK-GACRRGDMCEYAHG 326
                  8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.68E-1740183IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.2E-1743184IPR020683Ankyrin repeat-containing domain
CDDcd002041.99E-1448182No hitNo description
PfamPF127962.7E-1086158IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.30890193IPR020683Ankyrin repeat-containing domain
SMARTSM002480.006290120IPR002110Ankyrin repeat
PRINTSPR014158.8E-591106IPR002110Ankyrin repeat
PROSITE profilePS5008812.476125160IPR002110Ankyrin repeat
SMARTSM002480.0039125157IPR002110Ankyrin repeat
PRINTSPR014158.8E-5144158IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5306326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4306328IPR000571Zinc finger, CCCH-type
SMARTSM0035668336359IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.963336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE LAANNDVEGV  60
RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT YGSIDVIKLI VSLTDADVNR  120
ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL  180
MLQELLSADG SSTAERNLRV VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSAAGNG MSHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM  480
PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS  540
SPKSVDHSLF SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS  600
RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD GDEPDVSWVQ  660
SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE AWIEQMQLDQ LVAQQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.239500.0floral meristem| flower| root| seed| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453608950.0
Genevisible267534_at0.0
Expression AtlasAT2G41900-
AtGenExpressAT2G41900-
ATTED-IIAT2G41900-
Function -- GeneRIF ? help Back to Top
  1. OXIDATIVE STRESS 2 plays multiple roles in maintaining vegetative growth, activating stress tolerance, or entering into stress-induced reproduction. OXS2 can activate its own gene and those of floral integrator genes, with direct binding to the floral integrator promoter SOC1.
    [PMID: 21829164]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G41900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch P93755
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G41900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankAY0939570.0AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankAY0372320.0AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBankU904390.0U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565962.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLE4MVK80.0E4MVK8_EUTHA; mRNA, clone: RTFL01-01-D15
TrEMBLV4M9940.0V4M994_EUTSA; Uncharacterized protein
STRINGAT2G41900.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
MalvidsOGEM17852879
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Andersson-Gunner
    Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis.
    Plant J., 2006. 45(2): p. 144-65
    [PMID:16367961]
  4. Juenger TE, et al.
    Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression.
    Mol. Ecol., 2006. 15(5): p. 1351-65
    [PMID:16626458]
  5. Lindqvist C, et al.
    An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers.
    BMC Plant Biol., 2006. 6: p. 16
    [PMID:16928278]
  6. Sun J, et al.
    The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis.
    Plant Cell Physiol., 2007. 48(8): p. 1148-58
    [PMID:17609218]
  7. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  8. Reiland S, et al.
    Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
    Plant Physiol., 2009. 150(2): p. 889-903
    [PMID:19376835]
  9. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  10. Blanvillain R,Wei S,Wei P,Kim JH,Ow DW
    Stress tolerance to stress escape in plants: role of the OXS2 zinc-finger transcription factor family.
    EMBO J., 2011. 30(18): p. 3812-22
    [PMID:21829164]