PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G37000.1
Common NameT1J8.18
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 188aa    MW: 20682.1 Da    PI: 7.0301
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G37000.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.11.4e-33411366105
          TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnsssgk 89 
                   r++++hTkv+gR RRv ++a+ aar+F+L++eLG+++ ++tieWLl qa+p+i+++tg               +                  sss++
  AT2G37000.1  41 ARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATGYgtklisnwvdvaadD------------------SSSSS 120
                  69**********************************************************655555555444321..................11112 PP

          TCP  90 aaksaakskksqksaa 105
                  +++s +++ ++++s++
  AT2G37000.1 121 SMTSPQTQTQTPQSPS 136
                  2222223333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-2842130IPR005333Transcription factor, TCP
PROSITE profilePS5136924.4464397IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MIFQNVCRNE SNFNAIASES RSQTQFGVSK SSSSGGGCIS ARTKDRHTKV NGRSRRVTMP  60
ALAAARIFQL TRELGHKTEG ETIEWLLSQA EPSIIAATGY GTKLISNWVD VAADDSSSSS  120
SMTSPQTQTQ TPQSPSCRLD LCQPIGIQYP VNGYSHMPFT AMLLEPMTTT AESEVEIAEE  180
EERRRRHH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.374790.0silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453606940.0
Genevisible263888_at0.0
Expression AtlasAT2G37000-
AtGenExpressAT2G37000-
ATTED-IIAT2G37000-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G37000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT2G46830, AT3G15030, AT3G02150, AT3G27010, AT3G47620, AT4G18390, AT4G27330, AT5G08070, AT5G08330, AT5G51910, AT5G60970, AT1G01060, AT1G30210, AT1G35560, AT1G53230, AT1G58100, AT1G69690
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G37000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0069220.0AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence.
GenBankBT0107000.0BT010700.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankBT0115040.0BT011504.1 Arabidopsis thaliana At2g37000 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181237.11e-139TCP family transcription factor
SwissprotQ9SJK71e-140TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A178VXU11e-137A0A178VXU1_ARATH; Uncharacterized protein
STRINGAT2G37000.11e-139(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152651618
Representative plantOGRP9221459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Wagner R,Pfannschmidt T
    Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
    Gene, 2006. 381: p. 62-70
    [PMID:16934950]
  4. Aguilar-Martínez JA,Poza-Carrión C,Cubas P
    Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
    Plant Cell, 2007. 19(2): p. 458-72
    [PMID:17307924]
  5. Giraud E, et al.
    TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana.
    Plant Cell, 2010. 22(12): p. 3921-34
    [PMID:21183706]
  6. Danisman S, et al.
    Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.
    J. Exp. Bot., 2013. 64(18): p. 5673-85
    [PMID:24129704]
  7. Chen GH,Sun JY,Liu M,Liu J,Yang WC
    SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis.
    J Genet Genomics, 2014. 41(12): p. 617-25
    [PMID:25527103]