PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G32930.1
Common NameT21L14.13, ZFN2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 453aa    MW: 49747.4 Da    PI: 6.4369
Description zinc finger nuclease 2
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G32930.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-114570126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C+ff+rtG+C yG++C+++H+
  AT2G32930.1 45 PGERDCQFFLRTGQCGYGNSCRYNHP 70
                 5789*********************9 PP

2zf-CCCH23.31.1e-07951111127
                  GTS--TTTTT-SS-SSS CS
      zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                  +tG CkyG++Ck++H++
  AT2G32930.1  95 ETGACKYGPTCKYHHPK 111
                  79*************96 PP

3zf-CCCH35.51.7e-11131155226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+++++tG C++G  CkF+H+
  AT2G32930.1 131 GEKPCPYYMQTGLCRFGVACKFHHP 155
                  689*********************8 PP

4zf-CCCH406.7e-13264288327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++Crff+ tGtCkyGd Ck++H++
  AT2G32930.1 264 RAECRFFMNTGTCKYGDDCKYSHPK 288
                  799********************96 PP

5zf-CCCH32.81.2e-10308334127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C +f ++G+Ck+G++CkF H++
  AT2G32930.1 308 PGQPACGNFKAYGFCKFGANCKFDHSM 334
                  57899********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8124472IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-64471IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-94670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-55069IPR000571Zinc finger, CCCH-type
SMARTSM003560.5188111IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.54995112IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-495111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6129157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943129157IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6129156IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5133154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7258290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361261289IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-8262288IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6267289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5304333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319307335IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5307334IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-8309333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4313333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSETQQQVQN STGSIRSPDK IEDTFRRMKV NEDNMEQSSP YPDRPGERDC QFFLRTGQCG  60
YGNSCRYNHP LTNLPQGIIY YRDQLPERVG QPDCETGACK YGPTCKYHHP KDRNGAGPVL  120
FNVLGLPMRQ GEKPCPYYMQ TGLCRFGVAC KFHHPHPHSQ PSNGHSAYAM SSFPSVGFPY  180
ASGMTMVSLP PATYGAIPRP QVPQSQAYMP YMVAPSQGLL PPQGWATYMT ASNPIYNMKT  240
QLDSSSSASV AVTVTSHHHS FSERAECRFF MNTGTCKYGD DCKYSHPKER LLQSPPTLLN  300
PIVLPARPGQ PACGNFKAYG FCKFGANCKF DHSMLLNPYN NTGLAMSSLP TPYPYAPPVS  360
TNLRISSPPS PSDMTTLSNG KPAAAEAQSL ETEKQDDSPT EPEKSEVEDS LPPNGSDSTS  420
LPNDKPDAET EKQDDDSAEL DSSKVQDSSD KST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.112960.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible267604_at0.0
Expression AtlasAT2G32930-
AtGenExpressAT2G32930-
ATTED-IIAT2G32930-
Functional Description ? help Back to Top
Source Description
TAIREncodes a zinc finger protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G32930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G32930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1387440.0AF138744.1 Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565758.10.0zinc finger nuclease 2
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLF4IUS50.0F4IUS5_ARATH; Zinc finger CCCH domain-containing protein 26
STRINGAT2G32930.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Lloyd A,Plaisier CL,Carroll D,Drews GN
    Targeted mutagenesis using zinc-finger nucleases in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(6): p. 2232-7
    [PMID:15677315]
  2. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  3. Ma S,Gong Q,Bohnert HJ
    Dissecting salt stress pathways.
    J. Exp. Bot., 2006. 57(5): p. 1097-107
    [PMID:16510518]
  4. Cai S,Lashbrook CC
    Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2.
    Plant Physiol., 2008. 146(3): p. 1305-21
    [PMID:18192438]
  5. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  6. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  7. Bienvenut WV, et al.
    Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation features.
    Mol. Cell Proteomics, 2012. 11(6): p. M111.015131
    [PMID:22223895]