PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G27470.1
Common NameNF-YB11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YB
Protein Properties Length: 275aa    MW: 30549.9 Da    PI: 3.8898
Description nuclear factor Y, subunit B11
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G27470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB431.1e-1310102794
        NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  +lP+a v r++kk l +     +  i k+a     e +  fi ++++ a+d c+  +r+t+++dd++ al ++ f +++eplk  l+ +++ +
  AT2G27470.1  10 ELPLAIVRRVVKKKLSEcspdyDVSIHKEALLAFSESARIFIHYLSATANDFCKDARRQTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKN 102
                  69************9752222356899***********************************************************9998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-241099IPR009072Histone-fold
PfamPF008081.1E-71079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.29E-1812101IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KKKLSECSPD YDVSIHKEAL LAFSESARIF IHYLSATAND  60
FCKDARRQTM KADDVFKALE EMDFSEFLEP LKSSLEDFKK KNAGKKAGAA AASYPAGGAA  120
LKSSSGTASK PKETKKRKQE EPSTQKGARK SKIDEETKRN DEETENDNTE EENGNDEEDE  180
NGNDEEDEND DENTEENGND EENDDENTEE NGNDEENEKE DEENSMEENG NESEESGNED  240
HSMEENGSGV GEDNENEDGS VSGSGEEVES DEEDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.485230.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible265667_at0.0
Expression AtlasAT2G27470-
AtGenExpressAT2G27470-
ATTED-IIAT2G27470-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G27470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT3G48590, AT5G27910, AT5G63470, AT1G54830, AT1G56170
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G27470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040830.0BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180316.10.0nuclear factor Y, subunit B11
TrEMBLQ9ZQH20.0Q9ZQH2_ARATH; Nuclear factor Y, subunit B11
STRINGAT2G27470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
MalvidsOGEM120072430
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ramirez-Parra E,Fr
    A genome-wide identification of E2F-regulated genes in Arabidopsis.
    Plant J., 2003. 33(4): p. 801-11
    [PMID:12609051]
  3. Hackenberg D, et al.
    Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y.
    Mol Plant, 2012. 5(4): p. 876-88
    [PMID:22199235]