PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G27110.2
Common NameFRS3, T20P8.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 851aa    MW: 96257.5 Da    PI: 6.3514
Description FAR1-related sequence 3
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G27110.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.62e-1363136190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +fY+eY++++GF+ +       +++g++  r+fvCs + kr++++ +             +C+a+++++++ ++kw+vtk+++eH+H la
  AT2G27110.2  63 SFYDEYSRQLGFTSKLLP----RTDGSVSVREFVCSSSSKRSKRRLS------------ESCDAMVRIELQGHEKWVVTKFVKEHTHGLA 136
                  5***********988875....56899************99998877............89**************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-863136IPR004330FAR1 DNA binding domain
PfamPF105511.3E-22247338IPR018289MULE transposase domain
PROSITE profilePS5096610.608525561IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-9530559IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-8536563IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MDVHLVEENV SMGNHEIGDE GDVEPSDCSG QNNMDNSLGV QDEIGIAEPC VGMEFNSEKE  60
AKSFYDEYSR QLGFTSKLLP RTDGSVSVRE FVCSSSSKRS KRRLSESCDA MVRIELQGHE  120
KWVVTKFVKE HTHGLASSNM LHCLRPRRHF ANSEKSSYQE GVNVPSGMMY VSMDANSRGA  180
RNASMATNTK RTIGRDAHNL LEYFKRMQAE NPGFFYAVQL DEDNQMSNVF WADSRSRVAY  240
THFGDTVTLD TRYRCNQFRV PFAPFTGVNH HGQAILFGCA LILDESDTSF IWLFKTFLTA  300
MRDQPPVSLV TDQDRAIQIA AGQVFPGARH CINKWDVLRE GQEKLAHVCL AYPSFQVELY  360
NCINFTETIE EFESSWSSVI DKYDLGRHEW LNSLYNARAQ WVPVYFRDSF FAAVFPSQGY  420
SGSFFDGYVN QQTTLPMFFR LYERAMESWF EMEIEADLDT VNTPPVLKTP SPMENQAANL  480
FTRKIFGKFQ EELVETFAHT ANRIEDDGTT STFRVANFEN DNKAYIVTFC YPEMRANCSC  540
QMFEHSGILC RHVLTVFTVT NILTLPPHYI LRRWTRNAKS MVELDEHVSE NGHDSSIHRY  600
NHLCREAIKY AEEGAITAEA YNIALGQLRE GGKKVSVVRK RIGRAAPPSS HGGGIGSGDK  660
TSLSAADTTP LLWPRQDEMI RRFNLNDGGA RAQSVSDLNL PRMAPVSLHR DDTAPENMVA  720
LPCLKSLTWG MESKNTMPGG RVAVINLKLH DYRKFPSADM DVKFQLSSVT LEPMLRSMAY  780
ISEQLSSPAN RVAVINLKLQ DTETTTGESE VKFQVSRDTL GAMLRSMAYI REQLSIVGEL  840
QTESQAKKQR K
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.222690.0vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible266318_at0.0
Expression AtlasAT2G27110-
AtGenExpressAT2G27110-
ATTED-IIAT2G27110-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G27110.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G51600
IntActSearch Q9ZVC9
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G27110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0026900.0BT002690.1 Arabidopsis thaliana At2g27110/T20P8.16 gene, complete cds.
GenBankAY0574910.0AY057491.1 Arabidopsis thaliana At2g27110/T20P8.16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565636.10.0FAR1-related sequence 3
RefseqNP_850098.10.0FAR1-related sequence 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLR0HMV50.0R0HMV5_9BRAS; Uncharacterized protein
STRINGAT2G27110.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  3. Fernandez-Calvino L, et al.
    Arabidopsis plasmodesmal proteome.
    PLoS ONE, 2011. 6(4): p. e18880
    [PMID:21533090]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  5. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  6. Kim DY,Scalf M,Smith LM,Vierstra RD
    Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis.
    Plant Cell, 2013. 25(5): p. 1523-40
    [PMID:23667124]