PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G26940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 286aa    MW: 33349.9 Da    PI: 7.5571
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G26940.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017120141223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  +C  Cgk F + ++L  H+r+H
  AT2G26940.1 120 RCCLCGKEFQTMHSLFGHMRRH 141
                  7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.63E-74771No hitNo description
SMARTSM003551.34971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9124976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139120.0125171IPR007087Zinc finger, C2H2
SuperFamilySSF576679.63E-7114141No hitNo description
PROSITE profilePS501579.806119141IPR007087Zinc finger, C2H2
SMARTSM003550.091119141IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-4120143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0025022anatomycollective leaf structure
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKRTRDLYGD ESSSSESEEF HREKIRVKVK LPEERSEDED ESPQPQRKHF CVICEKQFSS  60
GKAYGGHVRI HSIEYNNKGK MKKMKKMKLK KKKKRKIGLV KKEKEKEIDL ARTDVEGKIR  120
CCLCGKEFQT MHSLFGHMRR HPDRTWKGIR PPPPSEKFNL SYLDDDVDDE DEDDDDVMSR  180
SMMMSDVPED VQGAACILMM LSYASRNYWA GIEESPKSEV RSSSFYKDDE GKDKVLGDSR  240
MDEKKGLIVD MKIKMEMEVK VNSPRDEAKR SLGFDLNQPP YHEDHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18494KKMKLKKKKKR
28995KKKKKRK
389101KKKKKRKIGLVKK
49095KKKKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184012790.0
Genevisible266854_at0.0
Expression AtlasAT2G26940-
AtGenExpressAT2G26940-
ATTED-IIAT2G26940-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G26940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G26940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0051680.0AC005168.3 Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180262.10.0C2H2-type zinc finger family protein
TrEMBLO810130.0O81013_ARATH; C2H2-type zinc finger family protein
STRINGAT2G26940.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Representative plantOGRP1249135
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Ciftci-Yilmaz S,Mittler R
    The zinc finger network of plants.
    Cell. Mol. Life Sci., 2008. 65(7-8): p. 1150-60
    [PMID:18193167]
  4. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]