PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G19820.1
Common NameASL35, F6F22.15, LBD9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 124aa    MW: 14486.1 Da    PI: 10.4266
Description LOB domain-containing protein 9
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G19820.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.33.3e-35121131101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +Ca C +++++C+k+C +apyfpae++ +++n+hklFG+sn++k+++ +++++ r++++ss+++e++a+ +dP +G +g+i+kl++q+e  k  l++l
  AT2G19820.1  12 PCALCTTKNKRCPKKCDFAPYFPAERKGEYENAHKLFGTSNIIKMMRFASKDKqRDMLASSILMEGDAWKKDPARGGFGMIQKLKWQIELRKIYLNEL 109
                  7**********************************************99766659****************************************999 PP

       DUF260  98 keel 101
                  ke++
  AT2G19820.1 110 KEKI 113
                  9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.14911113IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-2912109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDVSRVNVKR APCALCTTKN KRCPKKCDFA PYFPAERKGE YENAHKLFGT SNIIKMMRFA  60
SKDKQRDMLA SSILMEGDAW KKDPARGGFG MIQKLKWQIE LRKIYLNELK EKIKVEKEKT  120
ELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-17111001098LOB family transfactor Ramosa2.1
5ly0_B5e-17111001098LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402544770.0
Expression AtlasAT2G19820-
AtGenExpressAT2G19820-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G19820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G19820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738680.0AB473868.1 Arabidopsis thaliana ASL35 mRNA for ASYMMETRIC LEAVES2-like 35 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179572.15e-88LOB domain-containing protein 9
SwissprotO821984e-89LBD9_ARATH; LOB domain-containing protein 9
TrEMBLD7L0W55e-62D7L0W5_ARALL; Predicted protein
STRINGAT2G19820.12e-87(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122821432
Publications ? help Back to Top
  1. Iwakawa H, et al.
    The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.
    Plant Cell Physiol., 2002. 43(5): p. 467-78
    [PMID:12040093]
  2. Shuai B,Reynaga-Peña CG,Springer PS
    The lateral organ boundaries gene defines a novel, plant-specific gene family.
    Plant Physiol., 2002. 129(2): p. 747-61
    [PMID:12068116]
  3. Yang L,Liu Z,Lu F,Dong A,Huang H
    SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.
    Plant J., 2006. 47(6): p. 841-50
    [PMID:16889646]
  4. Matsumura Y,Iwakawa H,Machida Y,Machida C
    Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana, and functional and molecular comparisons between AS2 and other family members.
    Plant J., 2009. 58(3): p. 525-37
    [PMID:19154202]