PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G80730.1
Common NameATZFP1, F23A5.8, ZFP1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 228aa    MW: 25467.8 Da    PI: 10.5605
Description zinc-finger protein 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G80730.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176890123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  AT1G80730.1 68 FSCNYCQRKFYSSQALGGHQNAH 90
                 89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-66595No hitNo description
PROSITE profilePS5015711.4276895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000230anatomyinflorescence meristem
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEPSIKGDQE MLKIKKQGHQ DLELGLTLLS RGTATSSELN LIDSFKTSSS STSHHQHQQE  60
QLADPRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG QYYKMTLSSL PSSAFAFGHG  120
SVSRFASMAS LPLHGSVNNR STLGIQAHST IHKPSFLGRQ TTSLSHVFKQ SIHQKPTIGK  180
MLPEKFHLEV AGNNNSNMVA AKLERIGHFK SNQEDHNQFK KIDLTLKL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO7906720.0
Genevisible261910_at0.0
Expression AtlasAT1G80730-
AtGenExpressAT1G80730-
ATTED-IIAT1G80730-
Functional Description ? help Back to Top
Source Description
TAIREncodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G80730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G80730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankF23A50.0AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankBT0264060.0BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds.
GenBankATU535010.0U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds.
GenBankATHZFPA0.0L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178188.11e-169zinc finger protein 1
SwissprotQ424851e-170ZFP1_ARATH; Zinc finger protein 1
TrEMBLQ0V8141e-169Q0V814_ARATH; At1g80730
STRINGAT1G80730.11e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
MalvidsOGEM118581628
Publications ? help Back to Top
  1. Takatsuji H
    Zinc-finger proteins: the classical zinc finger emerges in contemporary plant science.
    Plant Mol. Biol., 1999. 39(6): p. 1073-8
    [PMID:10380795]
  2. Chrispeels HE,Oettinger H,Janvier N,Tague BW
    AtZFP1, encoding Arabidopsis thaliana C2H2 zinc-finger protein 1, is expressed downstream of photomorphogenic activation.
    Plant Mol. Biol., 2000. 42(2): p. 279-90
    [PMID:10794528]
  3. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  4. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  5. Albert VA, et al.
    Floral gene resources from basal angiosperms for comparative genomics research.
    BMC Plant Biol., 2005. 5: p. 5
    [PMID:15799777]
  6. Kodaira KS, et al.
    Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions.
    Plant Physiol., 2011. 157(2): p. 742-56
    [PMID:21852415]
  7. Tague BW,Goodman HM
    Characterization of a family of Arabidopsis zinc finger protein cDNAs.
    Plant Mol. Biol., 1995. 28(2): p. 267-79
    [PMID:7599312]
  8. Tague BW,Gallant P,Goodman HM
    Expression analysis of an Arabidopsis C2H2 zinc finger protein gene.
    Plant Mol. Biol., 1996. 32(5): p. 785-96
    [PMID:8980531]