PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G80580.1
Common NameERF084, T21F11.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 256aa    MW: 28826.9 Da    PI: 10.4084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G80580.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20115164255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  AT1G80580.1 115 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 164
                  789******.**********32....25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-29115180IPR001471AP2/ERF domain
PROSITE profilePS5103221.377115172IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-20115172IPR016177DNA-binding domain
PfamPF008477.5E-14115164IPR001471AP2/ERF domain
PRINTSPR003673.2E-9116127IPR001471AP2/ERF domain
CDDcd000182.87E-13116147No hitNo description
Gene3DG3DSA:3.30.730.102.6E-27116171IPR001471AP2/ERF domain
PRINTSPR003673.2E-9138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000036anatomyleaf vascular system
PO:0004724anatomyhypocotyl-root junction
PO:0005660anatomyhydathode
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0020100anatomyhypocotyl
PO:0004507developmental stageplant embryo bilateral stage
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MENSYTVDGH RLQYSVPLSS MHETSQNSET YGLSKESPLV CMPLFETNTT SFDISSLFSF  60
NPKPEPENTH RVMDDSIAAV VGENVLFGDK NKVSDHLTKE GGVKRGRKMP QKTGGFMGVR  120
KRPWGRWSAE IRDRIGRCRH WLGTFDTAEE AARAYDAAAR RLRGTKAKTN FVIPPLFPKE  180
IAQAQEDNRM RQKQKKKKKK KVSVRKCVKV TSVAQLFDDA NFINSSSIKG NVISSIDNLE  240
KMGLELDLSL GLLSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-17106171571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194200KKKKKKK
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260280_at0.0
Expression AtlasAT1G80580-
AtGenExpressAT1G80580-
ATTED-IIAT1G80580-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G80580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDethylene
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G80580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188480.0AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188490.0AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608440.0AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260380.0BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464460.0DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178173.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9M8M50.0ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A178WKT91e-136A0A178WKT9_ARATH; Uncharacterized protein
STRINGAT1G80580.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Brown RL,Kazan K,McGrath KC,Maclean DJ,Manners JM
    A role for the GCC-box in jasmonate-mediated activation of the PDF1.2 gene of Arabidopsis.
    Plant Physiol., 2003. 132(2): p. 1020-32
    [PMID:12805630]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  5. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  6. Riechmann JL,Meyerowitz EM
    The AP2/EREBP family of plant transcription factors.
    Biol. Chem., 1998. 379(6): p. 633-46
    [PMID:9687012]