PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G77200.1
Common NameERF037, T14N5.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 244aa    MW: 26729.4 Da    PI: 4.7463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G77200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-194191155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ ++g
  AT1G77200.1 41 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 91
                 79*****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-134191IPR001471AP2/ERF domain
CDDcd000181.15E-2241101No hitNo description
SuperFamilySSF541719.81E-2242100IPR016177DNA-binding domain
PROSITE profilePS5103223.1434299IPR001471AP2/ERF domain
SMARTSM003802.8E-3642105IPR001471AP2/ERF domain
PRINTSPR003672.4E-104354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3143100IPR001471AP2/ERF domain
PRINTSPR003672.4E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000033anatomyfruit valve
PO:0000034anatomyvascular system
PO:0000036anatomyleaf vascular system
PO:0000039anatomyshoot axis vascular system
PO:0000056anatomyflower bud
PO:0004707anatomyfruit dehiscence zone
PO:0005679anatomyepidermis
PO:0006325anatomyinflorescence node
PO:0009005anatomyroot
PO:0009010anatomyseed
PO:0009032anatomypetal
PO:0009067anatomyfilament
PO:0009072anatomyplant ovary
PO:0020128anatomyleaf margin
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTESSIISVK QSSPVPEEED HHHHQQDSHR TNTKKRVRSD PGYRGVRMRT WGKWVSEIRE  60
PRKKSRIWLG TFSTPEMAAR AHDAAALTIK GTSAVLNFPE LATYLPRPAS SSPRDVQAAA  120
AVAAAMDFSP SSSSLVVSDP TTVIAPAETQ LSSSSYSTCT SSSLSPSSEE AASTAEELSE  180
IVELPSLETS YDESLSEFVY VDSAYPPSSP WYINNCYSFY YHSDENGISM AEPFDSSNFG  240
PLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1743991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184113960.0
Genevisible264481_at0.0
Expression AtlasAT1G77200-
AtGenExpressAT1G77200-
ATTED-IIAT1G77200-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G77200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G77200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042600.0AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608750.0AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177844.11e-178Integrase-type DNA-binding superfamily protein
SwissprotO806541e-179ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A178WNI81e-177A0A178WNI8_ARATH; Uncharacterized protein
STRINGAT1G77200.11e-178(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]