PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G75340.2
Common NameCG1, F1B16.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 398aa    MW: 43420.8 Da    PI: 8.9009
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G75340.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.3e-0634461527
                 -TTTTT-SS-SSS CS
      zf-CCCH 15 CkyGdrCkFaHgp 27
                 C+yG++C+F H++
  AT1G75340.2 34 CRYGENCRFLHPQ 46
                 ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.671147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015031Biological Processprotein transport
GO:0051028Biological ProcessmRNA transport
GO:0005635Cellular Componentnuclear envelope
GO:0005643Cellular Componentnuclear pore
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MRKELCRNFQ RGSLGFVFYI LGFNLKSIDV RRCCRYGENC RFLHPQQAKP NNPFGFGTQN  60
QQQQQQQQQQ NSSNPFGFGV QSGGSSRPNQ FQNTWSRTAS TPTGGGAAAS TQQTGKQTQP  120
ADHKCTDPAA CKRVMQDDFK NERPMWKLTC YGHWKYFPCD VTGDISYEEL RAVAYEEAKR  180
GIPLQSIVER ERNLQNSKIA EFENFLRNPY KGSVTANQSP FAATTPSIFP QSSQINSPSP  240
AFSGFNQQTA FSNTNAGGLS SSGPPNAFAS FNKQPNAFSV NTPQPVPSGP SGFQTNPSTT  300
FKPASFGPGP GFATTPQNNN IFGQSTPTPA TNTSQNNQTA FNFNVPVASF TAPAINTTNT  360
SSGTELQIGG DPVDSSIWLK EKWNPGEIPE QAPPDAFV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.162560.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425632270.0
Genevisible261121_at0.0
Expression AtlasAT1G75340-
AtGenExpressAT1G75340-
ATTED-IIAT1G75340-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G75340.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G75340
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G75340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0147440.0BT014744.1 Arabidopsis thaliana At1g75340.1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001185401.10.0zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS30.0C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLR0GGF70.0R0GGF7_9BRAS; Uncharacterized protein
TrEMBLV4JQW50.0V4JQW5_EUTSA; Uncharacterized protein
STRINGAT1G75340.10.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  4. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  5. Tamura K,Fukao Y,Iwamoto M,Haraguchi T,Hara-Nishimura I
    Identification and characterization of nuclear pore complex components in Arabidopsis thaliana.
    Plant Cell, 2010. 22(12): p. 4084-97
    [PMID:21189294]