PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G72650.2
Common NameTRFL6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 630aa    MW: 70229.8 Da    PI: 5.2924
Description TRF-like 6
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G72650.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10542590348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I +++      Rt  ++k++w+++l
      AT1G72650.2 542 AWTLSEIAKLVEGVSKYGAGKWSEIKKHLFsshSYRTSVDLKDKWRNLL 590
                      7********************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.447535594IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-14537596IPR009057Homeodomain-like
SMARTSM007174.0E-12539592IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-16541600IPR009057Homeodomain-like
CDDcd116601.50E-20541591No hitNo description
PfamPF002491.8E-8542590IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGTVVGTVED RRDMFEGNAQ TRITPFSSTN QIGNPVAYKL VRVSGDGSLV PATDEEILEV  60
NDTDMHIPSD TCQTIGYLAT DEENVEVDET DMHIASDACQ TIGYLPAEGI PSRLSQIESS  120
EAINSGLLHS DNVQPYTDQV KSRSEYNEEM LQKVEQEERL ENVHGSQMPS TPADANIQCS  180
NENNFFEEDQ VHHEALLQDE CKMNESDMME RCSNAVASPK ETALSAAAQK PDFSRVRGEI  240
CLDNLPIKAL QETFRATFGR DTTVKDKTWL KRRIAMGLIN SCDVPTTNLR VKDNKLIGNQ  300
EKSNDVTNAI RKEMGDDVRA TKMKDAPSST DHVNGHSNGG NHYYASEDYS SEQRAAKRVR  360
KPTRRYIEEL SETDDKQQND KSVIPSKDQR LSEKSEVRSI SVSSGKRVTV TRMVSLAGSE  420
IEVPYVSHVR RSRPRENIMA LLGCHSSYLE DKASAAESNL NLSPSQLSSE VVNRDSVEKS  480
ASRPVQNEFA TSDENNVEHI LSEVDQEMEP EHIDSSGNSS DENNIGVPIM QGGALRRKHH  540
RAWTLSEIAK LVEGVSKYGA GKWSEIKKHL FSSHSYRTSV DLKDKWRNLL KTSFAQSPSN  600
SVGSLKKHGS MHIPTQILLR VRELAEKQSQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.261650.0flower| root| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible259862_at0.0
Expression AtlasAT1G72650-
AtGenExpressAT1G72650-
ATTED-IIAT1G72650-
Functional Description ? help Back to Top
Source Description
TAIRArabidopsis thaliana myb family transcription factor (At1g72650)
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G72650.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G72650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY1248680.0AY124868.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY5195400.0AY519540.1 Arabidopsis thaliana MYB transcription factor (At1g72650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_974133.10.0TRF-like 6
TrEMBLF4IDF10.0F4IDF1_ARATH; TRF-like 6
STRINGAT1G72650.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Representative plantOGRP16451536
Publications ? help Back to Top
  1. Karamysheva ZN,Surovtseva YV,Vespa L,Shakirov EV,Shippen DE
    A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis.
    J. Biol. Chem., 2004. 279(46): p. 47799-807
    [PMID:15364931]
  2. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]