PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G72010.1
Common NameF28P5.10, TCP22
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 375aa    MW: 39598.9 Da    PI: 8.9846
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G72010.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.33.3e-39591574102
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskks 100
                   k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++   ++s  s++ s+  ++a+++ +s  s
  AT1G72010.1  59 VKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStL-NASLRSGGGSTLFSQASKSSSSPLS 155
                  589****************************************************************99843.3333333323333333333233333 PP

          TCP 101 qk 102
                   +
  AT1G72010.1 156 FH 157
                  33 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-3663168IPR005333Transcription factor, TCP
PROSITE profilePS5136928.10963117IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MNQNSSVAEA TLQLNSGEKP SPGSIPFISS GQHGNISTSA TSSTSTSSGS ALAVVKSAVK  60
KPTKDRHTKV DGRGRRIRMP AMCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIIASTGT  120
GTIPANFSTL NASLRSGGGS TLFSQASKSS SSPLSFHSTG MSLYEDNNGT NGSSVDPSRK  180
LLNSAANAAV FGFHHQMYPP IMSTERNPNT LVKPYREDYF KEPSSAAEPS ESSQKASQFQ  240
EQELAQGRGT ANVVPQPMWA VAPGTTNGGS AFWMLPMSGS GGREQMQQQP GHQMWAFNPG  300
NYPVGTGRVV TAPMGSMMLG GQQLGLGVAE GNMAAAMRGS RGDGLAMTLD QHQHQLQHQE  360
PNQSQASENG GDDKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.230950.0flower| leaf| root| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425631560.0
Expression AtlasAT1G72010-
AtGenExpressAT1G72010-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G72010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G72010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0692730.0AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence.
GenBankAY0807760.0AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankAY1504880.0AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177346.10.0TCP family transcription factor
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A178W3Z10.0A0A178W3Z1_ARATH; Uncharacterized protein
STRINGAT1G72010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Representative plantOGRP45911023
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Wagner R,Pfannschmidt T
    Eukaryotic transcription factors in plastids--Bioinformatic assessment and implications for the evolution of gene expression machineries in plants.
    Gene, 2006. 381: p. 62-70
    [PMID:16934950]
  5. Aguilar-Martínez JA,Poza-Carrión C,Cubas P
    Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
    Plant Cell, 2007. 19(2): p. 458-72
    [PMID:17307924]
  6. Heyl A, et al.
    The transcriptional repressor ARR1-SRDX suppresses pleiotropic cytokinin activities in Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1380-95
    [PMID:18502977]
  7. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  8. Kim SH, et al.
    The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity.
    Plant J., 2014. 78(6): p. 978-89
    [PMID:24689742]
  9. Davi
    Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height.
    Curr. Biol., 2014. 24(16): p. 1923-8
    [PMID:25127215]
  10. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  11. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]