PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G71520.1
Common NameERF020, F26A9.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 143aa    MW: 15695.4 Da    PI: 4.9817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G71520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-171262155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykG+r++k +g+Wv+eIr+p +   r+r +lg+f tae+Aa a++ a  +l+ 
  AT1G71520.1 12 SKYKGIRRRK-WGKWVSEIRVPGT---RQRLWLGSFSTAEGAAVAHDVAFYCLHR 62
                 89*****998.**********943...5*********************999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.49E-261276No hitNo description
PfamPF008471.2E-81260IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-171274IPR016177DNA-binding domain
SMARTSM003807.9E-271380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-241375IPR001471AP2/ERF domain
PROSITE profilePS5103220.8371374IPR001471AP2/ERF domain
PRINTSPR003675.1E-91425IPR001471AP2/ERF domain
PRINTSPR003675.1E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDSRDTGETD QSKYKGIRRR KWGKWVSEIR VPGTRQRLWL GSFSTAEGAA VAHDVAFYCL  60
HRPSSLDDES FNFPHLLTTS LASNISPKSI QKAASDAGMA VDAGFHGAVS GSGGCEERSS  120
MANMEEEDKL SISVYDYLED DLV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.351780.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453374150.0
Expression AtlasAT1G71520-
AtGenExpressAT1G71520-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G71520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G71520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161620.0AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161630.0AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109990.0BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148160.0BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177307.11e-103Integrase-type DNA-binding superfamily protein
SwissprotQ9C9I81e-104ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A178WAF61e-101A0A178WAF6_ARATH; Uncharacterized protein
STRINGAT1G71520.11e-103(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  4. Ramel F, et al.
    Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.
    BMC Genomics, 2007. 8: p. 450
    [PMID:18053238]
  5. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]