PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G71130.1
Common NameAtERF070, CRF8, ERF070, F23N20.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 161aa    MW: 17951.3 Da    PI: 10.2101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G71130.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-2077132155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+WvAeIr+ +  +  +r r +lg+f taeeAa a+++a  kl g
  AT1G71130.1  77 KKYRGVRQRP-WGKWVAEIRCGRGACkgRRDRLWLGTFNTAEEAALAYDNASIKLIG 132
                  59********.**********655336566*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.3E-341159IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.17E-2577139No hitNo description
PROSITE profilePS5103221.21978140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2778139IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1978140IPR016177DNA-binding domain
PfamPF008471.5E-1478132IPR001471AP2/ERF domain
SMARTSM003806.5E-3178146IPR001471AP2/ERF domain
PRINTSPR003671.4E-117990IPR001471AP2/ERF domain
PRINTSPR003671.4E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR  60
FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA CKGRRDRLWL GTFNTAEEAA  120
LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1677141161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1677147470ATERF1
3gcc_A5e-1677147470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.741760.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible259750_at0.0
Expression AtlasAT1G71130-
AtGenExpressAT1G71130-
ATTED-IIAT1G71130-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. The biological role of Arabidopsis thaliana Ethylene Response Factor070, was characterized.
    [PMID: 24394776]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G71130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G71130
IntActSearch Q9C995
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G71130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0169720.0AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBankAK1755780.0AK175578.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-02-J01.
GenBankAK1756830.0AK175683.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-20-F22.
GenBankAK1757400.0AK175740.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-28-P11.
GenBankAK1757740.0AK175774.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-34-K21.
GenBankAK1759310.0AK175931.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-60-G16.
GenBankAK1760430.0AK176043.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-78-J24.
GenBankAK1761440.0AK176144.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-96-F12.
GenBankAK1762800.0AK176280.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-20-P21.
GenBankBT0256180.0BT025618.1 Arabidopsis thaliana At1g71130 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565012.11e-115Integrase-type DNA-binding superfamily protein
SwissprotQ9C9951e-116ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A178WNZ81e-113A0A178WNZ8_ARATH; CRF8
STRINGAT1G71130.11e-114(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. M
    Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism.
    Plant Physiol., 2007. 143(1): p. 156-71
    [PMID:17085508]
  5. Zhuang J, et al.
    Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
    Biochem. Biophys. Res. Commun., 2008. 371(3): p. 468-74
    [PMID:18442469]
  6. Huang YC,Chang YL,Hsu JJ,Chuang HW
    Transcriptome analysis of auxin-regulated genes of Arabidopsis thaliana.
    Gene, 2008. 420(2): p. 118-24
    [PMID:18577427]
  7. Cutcliffe JW,Hellmann E,Heyl A,Rashotte AM
    CRFs form protein-protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain.
    J. Exp. Bot., 2011. 62(14): p. 4995-5002
    [PMID:21705390]
  8. Ramaiah M,Jain A,Raghothama KG
    Ethylene Response Factor070 regulates root development and phosphate starvation-mediated responses.
    Plant Physiol., 2014. 164(3): p. 1484-98
    [PMID:24394776]