PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G68550.1
Common NameCRF10, ERF118, T26J14.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 324aa    MW: 35568.6 Da    PI: 4.3355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G68550.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18112159253
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                  +  GVr++k +g+W+AeIrdp     + +r +lg+f+t eeAaka++a ++++
  AT1G68550.1 112 KPVGVRQRK-WGKWAAEIRDPI----KkTRTWLGTFDTLEEAAKAYDAKKLEF 159
                  789*****9.**********72....35********************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.79E-23111159No hitNo description
PROSITE profilePS5103219.045112170IPR001471AP2/ERF domain
SMARTSM003802.8E-18112176IPR001471AP2/ERF domain
PfamPF008471.8E-12112159IPR001471AP2/ERF domain
PRINTSPR003671.7E-7113124IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-16114159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-22115159IPR001471AP2/ERF domain
PRINTSPR003671.7E-7135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK  60
VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI AVSASPAVPR KKPVGVRQRK  120
WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS  180
QCSRSSPVVP VEQDDTSASA LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ  240
IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD  300
SSFGFLDQLA PINISCPLKS FAAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.211490.0bud| flower| leaf| silique| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260209_at0.0
Expression AtlasAT1G68550-
AtGenExpressAT1G68550-
ATTED-IIAT1G68550-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G68550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G68550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0119150.0AC011915.5 Arabidopsis thaliana chromosome 1 BAC T26J14 genomic sequence, complete sequence.
GenBankAY0597820.0AY059782.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankAY0913030.0AY091303.1 Arabidopsis thaliana putative AP2 domain transcription factor (At1g68550) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177022.10.0Integrase-type DNA-binding superfamily protein
RefseqNP_974106.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9CA270.0EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A178WA980.0A0A178WA98_ARATH; Uncharacterized protein
STRINGAT1G68550.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Vergnolle C, et al.
    The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions.
    Plant Physiol., 2005. 139(3): p. 1217-33
    [PMID:16258011]
  5. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  6. Hayden CA,Jorgensen RA
    Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes.
    BMC Biol., 2007. 5: p. 32
    [PMID:17663791]
  7. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]