PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G66420.1
Common NameF28G11.12, T27F4.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 282aa    MW: 32413 Da    PI: 7.3089
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G66420.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.65.3e-3586175298
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                  +fqrlwseeDeiv+LqG+i+f++ tgksp++d ++f+efvk+sisf++s +q++ Ki +LK+K+++k+k+        fs+ h+qk+f+l+++iWg+
  AT1G66420.1  86 YFQRLWSEEDEIVMLQGIIKFEDVTGKSPFEDRHGFIEFVKNSISFEASVQQYIGKISQLKRKYTRKRKN-------GFSEGHEQKCFKLAMSIWGT 175
                  89******************************************************************99.......9*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.3E-2687174IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSKKHLKPLE TCFEDEEDDV IYLPPGLVTG ATSKKNEEFC GGSGKVQPSE MKRRSEGTST  60
DMTSKRAKKV SAEDEKKVGE WTKNPYFQRL WSEEDEIVML QGIIKFEDVT GKSPFEDRHG  120
FIEFVKNSIS FEASVQQYIG KISQLKRKYT RKRKNGFSEG HEQKCFKLAM SIWGTKETSK  180
KTDLCSSPKG KKVKEEDGDV TNSDWFENSF LLPSIESLGV DSVKRKWNVV PMEFKKKIEE  240
RLELLEADES ECKKMEEMLK VKNSECVKQK TNLLNEVIDV MT
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184085060.0
Expression AtlasAT1G66420-
AtGenExpressAT1G66420-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00214DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G66420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G66420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0740250.0AC074025.1 Arabidopsis thaliana chromosome 1 BAC F28G11 genomic sequence, complete sequence.
GenBankAC0206650.0AC020665.6 Arabidopsis thaliana chromosome 1 BAC T27F4 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176815.10.0DNA-binding storekeeper protein-related transcriptional regulator
TrEMBLQ9C5170.0Q9C517_ARATH; DNA-binding storekeeper protein-related transcriptional regulator
STRINGAT1G66420.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4222523
MalvidsOGEM31328181
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]