PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G66140.1
Common NameF15E12.19, ZFP4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 260aa    MW: 28308.5 Da    PI: 6.6703
Description zinc finger protein 4
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G66140.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000285107123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  AT1G66140.1  85 FSCNYCQRKFYSSQALGGHQNAH 107
                  89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-681112No hitNo description
PROSITE profilePS5015711.42785112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009025anatomyvascular leaf
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MRPILDLEIE ASSGSSSSQV ASNLSPVGED YKPISLNLSL SFNNNNNNNL DLESSSLTLP  60
LSSTSESSNP EQQQQQQPSV SKRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRAMRM  120
GLAGVFPGRG SSSNYAAAAT AAALSCLPLH GSGNGNMTSF RTLGIRAHSS AHDVSMTRQT  180
PETLIRNIAR FNQGYFGNCI PFYVEDDEAE MLWPGSFRQA TNAVAVEAGN DNLGERKMDF  240
LDVKQAMDME SSLPDLTLKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.255270.0flower| root
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible256528_at0.0
Expression AtlasAT1G66140-
AtGenExpressAT1G66140-
ATTED-IIAT1G66140-
Functional Description ? help Back to Top
Source Description
TAIREncodes a zinc finger protein containing only a single zinc finger.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G66140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G66140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0264800.0AC026480.6 Arabidopsis thaliana chromosome 1 BAC F15E12 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY0580870.0AY058087.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAY0560670.0AY056067.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
GenBankAK2302500.0AK230250.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-17-O17.
GenBankAK2302320.0AK230232.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-06-L22.
GenBankAK2302290.0AK230229.1 Arabidopsis thaliana mRNA for zinc finger protein ZFP4, complete cds, clone: RAFL23-05-K17.
GenBankAF3616300.0AF361630.1 Arabidopsis thaliana At1g66140/F15E12_19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176788.10.0zinc finger protein 4
SwissprotQ392630.0ZFP4_ARATH; Zinc finger protein 4
TrEMBLQ0WLF40.0Q0WLF4_ARATH; Zinc finger protein ZFP4
STRINGAT1G66140.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
MalvidsOGEM66722643
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Schenk PM, et al.
    Systemic gene expression in Arabidopsis during an incompatible interaction with Alternaria brassicicola.
    Plant Physiol., 2003. 132(2): p. 999-1010
    [PMID:12805628]
  3. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  4. Meister RJ, et al.
    Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
    Plant J., 2004. 37(3): p. 426-38
    [PMID:14731261]
  5. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  6. Cao D,Cheng H,Wu W,Soo HM,Peng J
    Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.
    Plant Physiol., 2006. 142(2): p. 509-25
    [PMID:16920880]
  7. Gaudinier A, et al.
    Enhanced Y1H assays for Arabidopsis.
    Nat. Methods, 2011. 8(12): p. 1053-5
    [PMID:22037706]
  8. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  9. Tague BW,Goodman HM
    Characterization of a family of Arabidopsis zinc finger protein cDNAs.
    Plant Mol. Biol., 1995. 28(2): p. 267-79
    [PMID:7599312]