PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60880.1
Common NameAGL56, T7P1.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 201aa    MW: 22659.3 Da    PI: 5.3432
Description AGAMOUS-like-56
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60880.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.35.4e-101149138
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHH.T-EEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLC.daevavi 38
                 k+i nk  ++v f+kRr+g++ KA+ L+ L  ++++a++
  AT1G60880.1 11 KKIINKPAKTVAFTKRREGLFRKASQLCLLSpATQIAIL 49
                 57889999**********************835677766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-5363IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.358351IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-13585IPR002100Transcription factor, MADS-box
PfamPF003195.3E-81251IPR002100Transcription factor, MADS-box
CDDcd002664.44E-151982No hitNo description
PRINTSPR004041.8E-72540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025074anatomyembryo sac
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGKKTKIEI KKIINKPAKT VAFTKRREGL FRKASQLCLL SPATQIAILA APMTSKSHAS  60
FYSFGHSSVD NVVSSLLYDH PPLTANQDNR SGLGFWWEDK RFDVSENVEE LKEAVDAVSR  120
MLNNVRCRLN DAVKSTQRDG GLEILHHQEE EVLQTRNDET KTNQTHEFEG GETSGSASWL  180
ENEDDILHFD DDFYTGIDPL F
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G60880
AtGenExpressAT1G60880
Functional Description ? help Back to Top
Source Description
TAIRRoot Specific
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0189080.0AC018908.8 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176285.11e-150AGAMOUS-like-56
SwissprotQ9C6335e-39AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A178W6G01e-149A0A178W6G0_ARATH; AGL56
TrEMBLQ9C9631e-149Q9C963_ARATH; AGAMOUS-like-56
STRINGAT1G60880.11e-150(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Representative plantOGRP1084328
Publications ? help Back to Top
  1. De Bodt S, et al.
    Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants.
    J. Mol. Evol., 2003. 56(5): p. 573-86
    [PMID:12698294]
  2. Parenicov√° L, et al.
    Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world.
    Plant Cell, 2003. 15(7): p. 1538-51
    [PMID:12837945]
  3. Boisson B,Giglione C,Meinnel T
    Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote.
    J. Biol. Chem., 2003. 278(44): p. 43418-29
    [PMID:12912986]
  4. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  5. de Folter S, et al.
    Comprehensive interaction map of the Arabidopsis MADS Box transcription factors.
    Plant Cell, 2005. 17(5): p. 1424-33
    [PMID:15805477]
  6. Gan Y,Filleur S,Rahman A,Gotensparre S,Forde BG
    Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana.
    Planta, 2005. 222(4): p. 730-42
    [PMID:16021502]
  7. Bemer M,Heijmans K,Airoldi C,Davies B,Angenent GC
    An atlas of type I MADS box gene expression during female gametophyte and seed development in Arabidopsis.
    Plant Physiol., 2010. 154(1): p. 287-300
    [PMID:20631316]
  8. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]