PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60380.1
Common NameT13D8.25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 318aa    MW: 37404.4 Da    PI: 9.0656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60380.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.73.8e-09912110128
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkkt 105
                  +de ++++yLk+ + ++    + +i+++d+++ +P      +  +  e+  f + + +++a gk      +sg W+  g+dk ++s+ +g+  g kk+
  AT1G60380.1   9 EDEVIISRYLKPMIVNRVSWPDLFIEDADVFNKDPYVK---F--H-AEIpSFVIVKPRTKACGKTDG--CDSGCWRIIGRDKLIKSEeTGKILGFKKI 98 
                  588899*******99998555457***********643...2..2.233245555555555554444..479*************98778889***** PP

          NAM 106 LvfykgrapkgektdWvmheyrl 128
                  L f  + +p+  k + vm+eyrl
  AT1G60380.1  99 LKFCLKWKPREYKRSLVMEEYRL 121
                  ******9**************98 PP

2NAM33.61.1e-1020029337128
          NAM  37 vdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......k.grapkgektdWvmhe 125
                   ++y ++P++L +    k +++ +  F++r         + +  ++gyWk + ++k ++s+ g+++g kk++ fy      + g + + +k +W+++e
  AT1G60380.1 200 NNVYCLHPSELVNvhDGKFHDNGICIFANRTCGV-----TDK-CNEGYWKIKHREKLIMSRYGQTIGWKKVFQFYetekerHfG-NGEEVKVTWTLKE 290
                  4789999999973223334677888888775543.....334.578*****************************443322112.233469******* PP

          NAM 126 yrl 128
                  yrl
  AT1G60380.1 291 YRL 293
                  *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5591139IPR003441NAC domain
SuperFamilySSF1019411.06E-249137IPR003441NAC domain
PfamPF023654.2E-69121IPR003441NAC domain
SuperFamilySSF1019418.89E-31150309IPR003441NAC domain
PROSITE profilePS5100519.596164309IPR003441NAC domain
PfamPF023654.3E-6224293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADTLLNAED EVIISRYLKP MIVNRVSWPD LFIEDADVFN KDPYVKFHAE IPSFVIVKPR  60
TKACGKTDGC DSGCWRIIGR DKLIKSEETG KILGFKKILK FCLKWKPREY KRSLVMEEYR  120
LTNNFNWKQD HVICKIRLLF EAEISFLLAK HFYTTSDSLP RNVLLPAYGF CSPDKQEEDE  180
FYPVTIMISE GKDWPSYVTN NVYCLHPSEL VNVHDGKFHD NGICIFANRT CGVTDKCNEG  240
YWKIKHREKL IMSRYGQTIG WKKVFQFYET EKERHFGNGE EVKVTWTLKE YRLTRKMNKN  300
KVVCVIKYKV KCLPRITS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184067270.0
Genevisible264276_at0.0
Expression AtlasAT1G60380-
AtGenExpressAT1G60380-
ATTED-IIAT1G60380-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565010.0DQ056501.1 Arabidopsis thaliana apical meristem formation protein-related (At1g60380) mRNA, complete cds.
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176241.10.0No Apical Meristem domain-containing protein
TrEMBLO807590.0O80759_ARATH; Apical meristem formation protein-related
STRINGAT1G60380.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]