PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60350.1
Common Nameanac024, NAC024, T13D8.22
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 320aa    MW: 37383.9 Da    PI: 7.6187
Description NAC domain containing protein 24
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60350.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.65.2e-151813010128
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
                  +d+ ++++yLk+ v + +   +++i+++d+++ +P+     +  + ++  f + + +++a gk      ++g W+  g+dk+++s+ + +  g kk+L
  AT1G60350.1  18 EDDAIISRYLKRMVVNGDSWPDHFIEDADVFNKNPNVE---F--DAESPSFVIVKPRTEACGKTDGC--ETGCWRIMGRDKPIKSTeTVKIQGFKKIL 108
                  6899*********99888666688***********643...2..33444566666676676655544..679************98445568****** PP

          NAM 107 vfykgrapkgektdWvmheyrl 128
                   f  +r+p+g k +Wvm+eyrl
  AT1G60350.1 109 KFCLKRKPRGYKRSWVMEEYRL 130
                  ********************98 PP

2NAM32.42.7e-1020930337128
          NAM  37 vdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk......gektdWvmhe 125
                   ++y ++P +L   ++    ++  +  F+     ++t  ++ r ++ gyWk   +d+ ++sk+g ++g kk++ f++ ++++       +k +W+++e
  AT1G60350.1 209 NNVYCLHPLELV-DLQDrmfNDYGTCIFA-----NKTCGKTDRCINGGYWKILHRDRLIKSKSGIVIGFKKVFKFHETEKERyfcggeDVKVTWTLEE 300
                  578899999995.3322011222333443.....34556899**********************************765554222111469******* PP

          NAM 126 yrl 128
                  yrl
  AT1G60350.1 301 YRL 303
                  *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.4389148IPR003441NAC domain
SuperFamilySSF1019414.18E-2618147IPR003441NAC domain
PfamPF023657.6E-918130IPR003441NAC domain
SuperFamilySSF1019415.49E-30159316IPR003441NAC domain
PROSITE profilePS5100520.317173320IPR003441NAC domain
PfamPF023653.2E-5234303IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEEDAAFDLL KAELLNAEDD AIISRYLKRM VVNGDSWPDH FIEDADVFNK NPNVEFDAES  60
PSFVIVKPRT EACGKTDGCE TGCWRIMGRD KPIKSTETVK IQGFKKILKF CLKRKPRGYK  120
RSWVMEEYRL TNNLNWKQDH VICKIRFMFE AEISFLLAKH FYTTSESLPR NELLPAYGFL  180
SSDKQLEDVS YPVTIMTSEG NDWPSYVTNN VYCLHPLELV DLQDRMFNDY GTCIFANKTC  240
GKTDRCINGG YWKILHRDRL IKSKSGIVIG FKKVFKFHET EKERYFCGGE DVKVTWTLEE  300
YRLSVKQNKF LCVIKFTYDN
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184067100.0
Genevisible264275_at1e-171
Expression AtlasAT1G60350-
AtGenExpressAT1G60350-
ATTED-IIAT1G60350-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176238.10.0NAC domain containing protein 24
TrEMBLO807560.0O80756_ARATH; NAC domain containing protein 24
STRINGAT1G60350.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]