PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60340.1
Common NameT13D8.21
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 371aa    MW: 42932.9 Da    PI: 6.2966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60340.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.3e-131913110128
          NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106
                  +de ++++yLk+ v + +   +++i+++++++ +P++      ++e+   f + + +++a gk      +sg W++ g+dk ++s+ +g+  g kk+L
  AT1G60340.1  19 EDEVIISRYLKPMVVNGDSWPDHFIEDANVFTKNPNEVF----NSERP-RFVIVKPRTEACGKTDG--CESGCWRTMGRDKLIKSEeTGKILGFKKIL 109
                  588899*******99888666688**************5....23344.45555556666654444..479*************98778889****** PP

          NAM 107 vfykgrapkgektdWvmheyrl 128
                   f  + +p   k +Wvm+eyrl
  AT1G60340.1 110 KFCIKWKPIEYKRSWVMEEYRL 131
                  ***9999999**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.29610149IPR003441NAC domain
PfamPF023656.0E-919131IPR003441NAC domain
SuperFamilySSF1019411.83E-2619147IPR003441NAC domain
SuperFamilySSF1019415.75E-22160282IPR003441NAC domain
PROSITE profilePS5100510.918174325IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEDNDAAYDQ VKSELLNSED EVIISRYLKP MVVNGDSWPD HFIEDANVFT KNPNEVFNSE  60
RPRFVIVKPR TEACGKTDGC ESGCWRTMGR DKLIKSEETG KILGFKKILK FCIKWKPIEY  120
KRSWVMEEYR LTNNLNWKQD HVICKIRLLF EAEISFLLAK HFYTTSESLL RHELLPSYGY  180
LSNTQEEDEF YLKTIMTSEG NDWPSYVTNN VYCLHPLELV DLQDVMFQSY GTCIFANGTC  240
GESDKCDGGY WKILHGDKLI KSNFGMVTGF KKVFEFYETV IHRYFCDGEE VKEETERLGH  300
QRCQGLLLPH RRGHVQTKSC GVVTVKEKRS LVEQPEEIVA APETPRQGKS EHNDPLKRKK  360
AIGCVGEKAE M
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184067070.0
Genevisible264273_s_at1e-128
Expression AtlasAT1G60340-
AtGenExpressAT1G60340-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176237.10.0No Apical Meristem domain-containing protein
TrEMBLO807550.0O80755_ARATH; No Apical Meristem domain-containing protein
STRINGAT1G60340.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]