PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G60240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 175aa    MW: 21318.9 Da    PI: 10.3288
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G60240.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM317.5e-101114111128
          NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                  +e +v +yLk  +++ ++   +++++ d+y  +Pw+L   ++     +   yfF++r+ ++     +    + g W+  g+d+ ++s  +g+  glkk
  AT1G60240.1  11 EEAIVANYLKMMIDNVNVWPRHFLRSEDVYCKNPWTLFV-TRDpiiLHFGRYFFVNRSVNSG---LTD-GCEYGCWRIIGRDRVIKSVtTGKILGLKK 103
                  57899************877788**************62.11111133477****9987653...333.3578************9986677778888 PP

          NAM 105 tLvfy..............kgrapkgektdWvmheyrl 128
                  +  f               k++++   +  W m+eyr+
  AT1G60240.1 104 VYKFCetdrkpksvfkfleKEKRRVRDRRIWAMEEYRF 141
                  888875555555444444323444446889******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.1811157IPR003441NAC domain
PfamPF023652.2E-711140IPR003441NAC domain
SuperFamilySSF1019417.45E-2411155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MMKSRREQSI EEAIVANYLK MMIDNVNVWP RHFLRSEDVY CKNPWTLFVT RDPIILHFGR  60
YFFVNRSVNS GLTDGCEYGC WRIIGRDRVI KSVTTGKILG LKKVYKFCET DRKPKSVFKF  120
LEKEKRRVRD RRIWAMEEYR FASTWKQDYV ICKIRRLYPQ PFDYMLAQHI RGYYK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453368930.0
Genevisible264269_at0.0
Expression AtlasAT1G60240-
AtGenExpressAT1G60240-
ATTED-IIAT1G60240-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G60240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G60240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankT13D80.0AC004473.1 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankBT0257390.0BT025739.1 Arabidopsis thaliana At1g60240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176230.21e-129No Apical Meristem domain-containing protein
TrEMBLQ1ECJ51e-129Q1ECJ5_ARATH; At1g60240
STRINGAT1G60240.11e-129(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Becker JD,Boavida LC,Carneiro J,Haury M,Feij
    Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome.
    Plant Physiol., 2003. 133(2): p. 713-25
    [PMID:14500793]
  3. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]
  4. Borges F, et al.
    Comparative transcriptomics of Arabidopsis sperm cells.
    Plant Physiol., 2008. 148(2): p. 1168-81
    [PMID:18667720]
  5. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]