PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G58220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 834aa    MW: 86281.5 Da    PI: 10.5984
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G58220.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.6e-11195239144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEde l+ avk++G g+W++I+++     Rt+ q+  rw
      AT1G58220.1 195 RKKWSAEEDEELIAAVKRHGEGSWALISKEEFeGERTASQLSQRW 239
                      789*************************98777789999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-15189244IPR009057Homeodomain-like
PROSITE profilePS5129417.475190247IPR017930Myb domain
SuperFamilySSF466894.45E-12191245IPR009057Homeodomain-like
SMARTSM007172.0E-10194245IPR001005SANT/Myb domain
PfamPF002493.5E-9195239IPR001005SANT/Myb domain
CDDcd116603.72E-13196239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MVDNSNNKKR KEFISEADIA TLLQRYDTVT ILKLLQEMAY YAEAKMNWNE LVKKTSTGIT  60
SAREYQLLWR HLAYRDSLVP VGNNARVLDD DSDMECELEA SPGVSVDVVT EAVAHVKVMA  120
ASYVPSESDI PEDSTVEAPL TINIPYSLHR GPQEPSDSYW SSRGMNITFP VFLPKAAEGH  180
NGNGLASSLA PRKRRKKWSA EEDEELIAAV KRHGEGSWAL ISKEEFEGER TASQLSQRWG  240
AIRRRTDTSN TSTQTGLQRT EAQMAANRAL SLAVGNRLPS KKLAVGMTPM LSSGTIKGAQ  300
ANGASSGSTL QGQQQPQPQI QALSRATTSV PVAKSRVPVK KTTGNSTSRA DLMVTANSVA  360
AAACMSGLAT AVTVPKIEPG KNAVSALVPK TEPVKTASTV SMPRPSGISS ALNTEPVKTA  420
VAASLPRSSG IISAPKVEPV KTAASAASLP RPSGMISAPK VEPVKTTASV ASLPRPSGII  480
SAPKAEPVKT AASAASSPRP SGMISAPKVE SVKTTASMPR PSGIISAPKA ELVKSAASAA  540
SLPCTSGIIS SPKAELVKSA ASAASFPRPS SMLSAPKADP VKIVPAAATN TKSVGPLNLR  600
HAVNGSPNHT IPSSPFTKPL HMAPLSKGST IQSNSVPPSF ASSRLVPTQR APAATVVTPQ  660
KPSVVAAATV VTPQKPSVGA AATVVTPQKP SVGAAANVVT PQKPSVGSAA TVVTPQKPSV  720
GAAVTVTSKP VGVQKEQTQG NRASPLVTAT LPPNKTIPAN SVIGTAKAVA AKVETPPSLM  780
PKKNEVVGSC TDKSSLDKPP EKESTTTVSP LAVAATKSKP KDEATVTGTG LKEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.279690.0flower| seed| silique| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306962280.0
Genevisible256198_at0.0
Expression AtlasAT1G58220-
AtGenExpressAT1G58220-
ATTED-IIAT1G58220-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G58220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDabscisic acid, jasmonic acid, salicylic acid
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G58220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176118.20.0Homeodomain-like superfamily protein
TrEMBLQ8GZ960.0Q8GZ96_ARATH; At1g58220
STRINGAT1G58220.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Representative plantOGRP59231520
Publications ? help Back to Top
  1. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  2. Panjabi P, et al.
    Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes.
    BMC Genomics, 2008. 9: p. 113
    [PMID:18315867]