PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G49120.1
Common NameCRF9, ERF117, F27J15.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 329aa    MW: 37478 Da    PI: 4.6762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G49120.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.4e-1585132152
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                  sg+kGVr+++ +g+++AeIr p e   +kr +lg+f t+eeAa+a+ + +++
  AT1G49120.1  85 SGFKGVRRRP-WGKFAAEIRNPFE---KKRKWLGTFPTEEEAAEAYQKSKRE 132
                  79********.**********644...5******************887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-2085126No hitNo description
PfamPF008471.1E-985126IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1585133IPR016177DNA-binding domain
SMARTSM003809.6E-1786146IPR001471AP2/ERF domain
PROSITE profilePS5103219.30986143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1987133IPR001471AP2/ERF domain
PRINTSPR003673.7E-88798IPR001471AP2/ERF domain
PRINTSPR003673.7E-8109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MISFREENID LNLIKTISVI CNDPDATDSS SDDESISGNN PRRQIKPKPP KRYVSKICVP  60
TLIKRYENVS NSTGNKAAGN RKTSSGFKGV RRRPWGKFAA EIRNPFEKKR KWLGTFPTEE  120
EAAEAYQKSK REFDERLGLV KQEKDLVDLT KPCGVRKPEE KEVTEKSNCK KVNKRIVTDQ  180
KPFGCGYNAD HEEEGVISKM LEDPLMTSSI ADIFGDSAVE ANDIWVDYNS VEFISIVDDF  240
KFDFVENDRV GKEKTFGFKI GDHTKVNQHA KIVSTNGDLF VDDLLDFDPL IDDFKLEDFP  300
MDDLGLLGDP EDDDFSWFNG TTDWIDKFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190110RRRPWGKFAAEIRNPFEKKRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184024900.0
Expression AtlasAT1G49120-
AtGenExpressAT1G49120-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G49120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G49120
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0160410.0AC016041.5 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence.
GenBankAY5608400.0AY560840.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g49120) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175338.10.0Integrase-type DNA-binding superfamily protein
SwissprotQ9M9B20.0EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLA0A178WIZ60.0A0A178WIZ6_ARATH; CRF9
STRINGAT1G49120.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]