PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G33070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18384.7 Da    PI: 6.6732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G33070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.85.8e-084241636
                 HHHHHHHHHHHHHHHHT-EEE CS
       SRF-TF 16 RrngilKKAeELSvLCdaeva 36
                 R++gi KK +EL +LCd++++
  AT1G33070.1  4 RKEGITKKLYELATLCDIKAC 24
                 9******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.1E-5424IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-6426IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPMRKEGITK KLYELATLCD IKACAGKISE HQYGARDLQD LSFHIDHYIN QLNSRVKILT  60
NNGESSSSVP PLLHTSVAGA GAAPLPVAGA DLPMDQNQYE PIQLYIPIGL SYHIQYQHEI  120
YDNFKHAHIL FMNGNYYNYH QTPTVGLTTT GHMPSNNNTT PTTDV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183987320.0
Genevisible261595_at0.0
Expression AtlasAT1G33070-
AtGenExpressAT1G33070-
ATTED-IIAT1G33070-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G33070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G33070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064241e-166AC006424.5 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete sequence.
GenBankAC0210451e-166AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankCP0026841e-166CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174583.11e-121MADS-box family protein
SwissprotQ9C6V35e-54AGL86_ARATH; Agamous-like MADS-box protein AGL86
TrEMBLF4HPG81e-119F4HPG8_ARATH; MADS-box family protein
STRINGAT1G33070.11e-120(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Publications ? help Back to Top
  1. Kofuji R, et al.
    Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses.
    Mol. Biol. Evol., 2003. 20(12): p. 1963-77
    [PMID:12949148]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]