PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G32360.1
Common NameF27G20.10, F5D14.12
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 384aa    MW: 40706 Da    PI: 7.9467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G32360.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-0792115125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  +kt+lC+ f++ GtC+y  +C+FaH
  AT1G32360.1  92 FKTKLCCKFRA-GTCPYITNCNFAH 115
                  69*********.************* PP

2zf-CCCH42.61e-13261286126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  AT1G32360.1 261 WKTRICNKWEITGYCPFGAKCHFAHG 286
                  8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1389124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-789122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3891118IPR000571Zinc finger, CCCH-type
SMARTSM003560.004491117IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-592115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7172199IPR000571Zinc finger, CCCH-type
SMARTSM003560.47172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-8173199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-17254290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-9257291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178260288IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9260287IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11261286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSHHRRDSGG DVVHVIPTNN PPPDNWFPNL GDSAVWATED DYNRAWAMNP DNTSGDNNGP  60
PNKKTRGSPS SSSATTTSAA SNRTKAIGKM FFKTKLCCKF RAGTCPYITN CNFAHTVEEL  120
RRPPPNWQEI VAAHEEERSG GMGTPTVSVV EIPREEFQIP SLVSSTAESG RSFKGRHCKK  180
FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGSGG GGGSGGGSVG GGGSSSNVVV  240
LGGGGGSGSG SGIQILKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEE  300
EGKDGVSPNP DTKQTVQNPK GLSDTTTLLS PGVPHNADAS YHTGVALQRA SSAVTQKPGI  360
RTHQKWKGPA KISRIYGDWI DDIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217227SGGGGGSGGGS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425624640.0
Genevisible260652_at0.0
Expression AtlasAT1G32360-
AtGenExpressAT1G32360-
ATTED-IIAT1G32360-
Function -- GeneRIF ? help Back to Top
  1. Knock-out mutants in identified candidate genes (CYR1, At1g32360 and RLP48) were isolated and differences in root hair traits in the mutants were confirmed.
    [PMID: 25781967]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G32360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G32360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180130.0AK118013.1 Arabidopsis thaliana At1g32360 mRNA for putative RING-H2 zinc finger protein ATL6, complete cds, clone: RAFL19-22-M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564396.10.0Zinc finger (CCCH-type) family protein
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A178W5Q10.0A0A178W5Q1_ARATH; Uncharacterized protein
STRINGAT1G32360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Representative plantOGRP20451737
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  3. Kosarev P,Mayer KF,Hardtke CS
    Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome.
    Genome Biol., 2002. 3(4): p. RESEARCH0016
    [PMID:11983057]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  6. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]
  7. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  8. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  9. Jones AM, et al.
    Border control--a membrane-linked interactome of Arabidopsis.
    Science, 2014. 344(6185): p. 711-6
    [PMID:24833385]
  10. Stetter MG,Schmid K,Ludewig U
    Uncovering genes and ploidy involved in the high diversity in root hair density, length and response to local scarce phosphate in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(3): p. e0120604
    [PMID:25781967]