PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G26610.1
Common NameT1K7.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 455aa    MW: 51131.3 Da    PI: 9.6361
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G26610.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00075399421123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F++   L  H r+H
  AT1G26610.1 399 HECPICFRVFKSGQALGGHKRSH 421
                  79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-6535No hitNo description
Gene3DG3DSA:3.30.160.604.5E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-5932IPR007087Zinc finger, C2H2
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139121.5E-493117IPR007087Zinc finger, C2H2
SMARTSM003550.1993115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4593120IPR007087Zinc finger, C2H2
SuperFamilySSF576679.41E-794115No hitNo description
Gene3DG3DSA:3.30.160.607.4E-494117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576679.41E-7394421No hitNo description
PfamPF139123.9E-10399421IPR007087Zinc finger, C2H2
SMARTSM003550.14399421IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974399421IPR007087Zinc finger, C2H2
PROSITE patternPS000280401421IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001016developmental stageL mature pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDEADKLKMI DENGGQSSYG  60
LRENPKKNKR FVDHRQIMAL KQQQQQQQLQ ELRRCRECGK GFVSSKALCG HMACHSEREK  120
IVMDSQSDTE ASSSPIRRRS KRVVVKPHHK AAFVVGGNGI MNQSISASSD ASEIEPEQEE  180
MARSLMMLSR DSSFKKGHNS LAESSDNNSV ILETKSSSGE QVKMFNVKNV EELCKKNKLV  240
VDNQMRSGEE NGDVHYDSDN SDSGYFRNGP KKLDSDVSVD GFFRNKTIMG SGSGFNSSPT  300
KQDRDMNRFR KEWYKEGGSG SGSGSGRSST KYDLRKSKRG FPSHGRKKIK YEFTESVYDS  360
GEHSLETDSC ADTNRTIKIH SKSPMVKKAN GAKKKSKGHE CPICFRVFKS GQALGGHKRS  420
HFIGNQEHRT LVIQHQVAHE MHTLIDLNLP APIDE
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425623320.0
Genevisible260997_at0.0
Expression AtlasAT1G26610-
AtGenExpressAT1G26610-
ATTED-IIAT1G26610-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G26610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G26610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173983.10.0C2H2-like zinc finger protein
TrEMBLQ9FZE50.0Q9FZE5_ARATH; C2H2-like zinc finger protein
STRINGAT1G26610.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Representative plantOGRP5450716
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  4. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]