PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G25250.1
Common NameAtIDD16, F4F7.36, IDD16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 362aa    MW: 41480.9 Da    PI: 8.3422
Description indeterminate(ID)-domain 16
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G25250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-063961123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  AT1G25250.1 39 YVCEICNQGFQRDQNLQMHRRRH 61
                 9*********************9 PP

2zf-C2H214.88e-05118140123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C+ C+k +  +s++k H++t+
  AT1G25250.1 118 WVCERCSKGYAVQSDYKAHLKTC 140
                  58*******************98 PP

3zf-C2H211.30.0011148166523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr +++  H+ t+
  AT1G25250.1 148 DCGRVFSRVESFIEHQDTC 166
                  9***************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-53662No hitNo description
Gene3DG3DSA:3.30.160.601.4E-53861IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.973961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM0035516082112IPR015880Zinc finger, C2H2-like
SMARTSM0035594118145IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MELTQPIREN GDPQGHQLTD PDAEVVSLSP RTLLESDRYV CEICNQGFQR DQNLQMHRRR  60
HKVPWKLLKR DKKDEEVRKR VYVCPEPTCL HHDPCHALGD LVGIKKHFRR KHSVHKQWVC  120
ERCSKGYAVQ SDYKAHLKTC GSRGHSCDCG RVFSRVESFI EHQDTCTIRQ PQPTNHRHLQ  180
QHTMGLDAPS RTTSTASFGP LLHGLPLLRP PRPSNQHSPA FAYPFNASSA PFESLELQLS  240
IGMARTSAQA RHNEKRETSL TKERANEEAR KAEETRQEAK RQIEMAEKDF EKAKRIREEA  300
KTELEKAHVV REEAIKRINA TMMEITCHSC KQLFQLPVTA DESTSSLVMS YVSSATTEGE  360
CE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-17116166555Zinc finger protein JACKDAW
5b3h_F4e-17116166555Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183956180.0
Genevisible245635_at0.0
Expression AtlasAT1G25250-
AtGenExpressAT1G25250-
ATTED-IIAT1G25250-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves, hypocotyls, roots, vasculature of cotyledons, floral organs and in the endodermis and vasculaturenof inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Function -- GeneRIF ? help Back to Top
  1. both gain- and loss-of-function mutants in IDD14 and its close homologs, IDD15 and IDD16, reveals that these three IDD transcription factors function redundantly and cooperatively in the regulation of multiple aspects of lateral organ morphogenesis
    [PMID: 24039602]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G25250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G25250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173896.10.0indeterminate(ID)-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLA0A178WG740.0A0A178WG74_ARATH; IDD16
STRINGAT1G25250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Representative plantOGRP9516242
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Lee BH,Henderson DA,Zhu JK
    The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.
    Plant Cell, 2005. 17(11): p. 3155-75
    [PMID:16214899]
  4. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  5. Morita MT, et al.
    A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
    Plant J., 2006. 47(4): p. 619-28
    [PMID:16813575]
  6. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  7. Cui D, et al.
    The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.
    PLoS Genet., 2013. 9(9): p. e1003759
    [PMID:24039602]
  8. Qu Y, et al.
    Peroxisomal CuAO╬ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]