PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G17040.1
Common NameATSHA, SHA, STATLA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family STAT
Protein Properties Length: 641aa    MW: 72636.3 Da    PI: 5.5
Description SH2 domain protein A
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G17040.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.48.5e-592213391118
         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypf 97 
                  ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d ea+LL+sy+G+e+s+ed+p++ll+G+asfk+k+sqLssk+d+rLf+ikfeip++k+ ypf
  AT1G17040.1 221 LDVVLTNAIGQPVHKDVKVVASLLYADSGTHVEKRSDFEAFLLVSYEGIELSAEDKPCNLLNGCASFKFKLSQLSSKSDKRLFCIKFEIPEVKAnYPF 318
                  8*******************************************************************************************988*** PP

         STAT  98 leavskpirCisrsrntrsss 118
                  le+v+++irCisr+r++ ss 
  AT1G17040.1 319 LETVTNQIRCISRNRDSVSSM 339
                  ***************976654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2004.0E-623147IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133852.8E-825180No hitNo description
SuperFamilySSF498993.6E-927168IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103382.61E-68536641No hitNo description
SuperFamilySSF555501.36E-14544634IPR000980SH2 domain
PROSITE profilePS5000110.404547641IPR000980SH2 domain
Gene3DG3DSA:3.30.505.102.4E-10552633IPR000980SH2 domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001185developmental stageplant embryo globular stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MAGDCAIDTE KYSLLEDFNV DVEVENKAFE TFSLCFWVYL LDSTTYPSAI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHREAPDPVN TSSWTEVPNV STTAKFPLQK WVHVGCEVSR  120
NYMRLYICGE LVGEQVLTSL MTNGTNSDCA RKISLFSVGG DGYSVQGFIH SAEVLPSNLS  180
ASYHYTKDPP LWLSVDKPST SGIELDEDGV WSVVSGTFCS LDVVLTNAIG QPVHKDVKVV  240
ASLLYADSGT HVEKRSDFEA FLLVSYEGIE LSAEDKPCNL LNGCASFKFK LSQLSSKSDK  300
RLFCIKFEIP EVKANYPFLE TVTNQIRCIS RNRDSVSSMK RIRLGEEKVS ESKIVNGNGT  360
SMEWRPQNHE EDNSSTDSEN TEMRDSTAFR RYSIPDWIIF KYCLGNLTER ALLLKEITNN  420
SSDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW NLISRNYRHV HWDNVVIEIE  480
EHFMRIAKCS SRSLTHQDFD LLRRICGCYE YITQENFETM WCWLFPVASA VSRGLINGMW  540
RSASPKWIEG FVTKEEAERS LQNQVPGTFI LRFPTSRSWP HPDAGSVVVT YVGHDLVIHH  600
RLLTINHICD SSERYTDAKQ LQDMLLAEPE LSRLGRIIRG I
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.418550.0silique
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible262534_at0.0
Expression AtlasAT1G17040-
AtGenExpressAT1G17040-
ATTED-IIAT1G17040-
Functional Description ? help Back to Top
Source Description
TAIREncodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G17040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G17040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173147.20.0SH2 domain protein A
TrEMBLB5X5610.0B5X561_ARATH; At1g17040
STRINGAT1G17040.20.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Hu W,Wang Y,Bowers C,Ma H
    Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis.
    Plant Mol. Biol., 2003. 53(4): p. 545-63
    [PMID:15010618]
  2. Williams JG,Zvelebil M
    SH2 domains in plants imply new signalling scenarios.
    Trends Plant Sci., 2004. 9(4): p. 161-3
    [PMID:15063865]
  3. Gao Q, et al.
    Identification of the linker-SH2 domain of STAT as the origin of the SH2 domain using two-dimensional structural alignment.
    Mol. Cell Proteomics, 2004. 3(7): p. 704-14
    [PMID:15073273]
  4. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]