PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G12890.1
Common NameERF088, F13K23.25
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 219aa    MW: 25010.5 Da    PI: 5.5435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G12890.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-172069255
          AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  AT1G12890.1 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAAFAYDVAARSISG 69
                 799******.**********66.....34**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-302083IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-202077IPR016177DNA-binding domain
PROSITE profilePS5103220.6262077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-272076IPR001471AP2/ERF domain
CDDcd000183.17E-292076No hitNo description
PfamPF008473.9E-102068IPR001471AP2/ERF domain
PRINTSPR003671.4E-82132IPR001471AP2/ERF domain
PRINTSPR003671.4E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLKSSNKRKS KEEKKLQEGK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAAFAY  60
DVAARSISGS LATTNFFYTE NTSLERHPQQ SLEPHMTWGS SSLCLLQDQP FENNHFVADP  120
ISSSFSQKQE SSTNLTNTFS HCYNDGDHVG QSKEISLPND MSNSLFGHQD KVGEHDNADH  180
MKFGSVLSDE PLCFEYDYIG NYLQSFLKDV NDDAPQFLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1817761171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183914510.0
Expression AtlasAT1G12890-
AtGenExpressAT1G12890-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G12890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G12890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K230.0AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172749.11e-166Integrase-type DNA-binding superfamily protein
SwissprotQ3E7031e-167ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A178W8Q41e-165A0A178W8Q4_ARATH; Uncharacterized protein
STRINGAT1G12890.11e-165(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]