PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G12630.1
Common NameERF027, T12C24.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 192aa    MW: 20770.3 Da    PI: 4.8383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G12630.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-161766155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++  ae+Aa+a++ a+ +l+g
  AT1G12630.1 17 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPMAEMAAAAYDVAAMALKG 66
                 68****9.55.6*********843...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-101766IPR001471AP2/ERF domain
SMARTSM003801.4E-261880IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-261874IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-171875IPR016177DNA-binding domain
PROSITE profilePS5103219.5721874IPR001471AP2/ERF domain
PRINTSPR003672.4E-61930IPR001471AP2/ERF domain
CDDcd000185.59E-161974No hitNo description
PRINTSPR003672.4E-65676IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNSSMASAGL GSRRKDPVYR GIRCRSGKWV SEIREPRKTT RIWLGTYPMA EMAAAAYDVA  60
AMALKGREAV LNFPGSVGSY PVPESTSAAD IRAAAAAAAA MKGCEEGEEE KKAKEKKSSS  120
SKSRARECHV DNDVGSSSWC GTEFMDEEEV LNMPNLLANM AEGMMVAPPS WMGSRPSDDS  180
PENSNDEDLW GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12574172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453355260.0
Genevisible255927_at0.0
Expression AtlasAT1G12630-
AtGenExpressAT1G12630-
ATTED-IIAT1G12630-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G12630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G12630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0254170.0AC025417.4 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ1457760.0DQ145776.1 Arabidopsis thaliana Ap2/EREBP transcription factor (At1g12630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172723.21e-138Integrase-type DNA-binding superfamily protein
SwissprotQ38Q391e-139ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP861e-100D7KP86_ARALL; DNA binding protein
STRINGAT1G12630.11e-137(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Feng JX, et al.
    An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.
    Plant Mol. Biol., 2005. 59(6): p. 853-68
    [PMID:16307362]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  5. Geddy R,Brown GG
    Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection.
    BMC Genomics, 2007. 8: p. 130
    [PMID:17521445]