PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G08290.1
Common NameT23G18.15, WIP3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 337aa    MW: 38596 Da    PI: 8.9538
Description WIP domain protein 3
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G08290.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05180199120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  AT1G08290.1 180 FACSICSKTFNRYNNMQMHM 199
                  78*****************9 PP

2zf-C2H210.90.0014265287123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cgk    k + ++H +++
  AT1G08290.1 265 FSCGKCGKALAVKGDWRTHEKNC 287
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.79E-9159203No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45180207IPR007087Zinc finger, C2H2
SMARTSM003550.17180202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SMARTSM00355170228260IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.64E-5250285No hitNo description
Gene3DG3DSA:3.30.160.609.3E-4251285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190265285IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.538285318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF  60
LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV TLQIGFPKYH RGSSEDGSDI  120
TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF  180
ACSICSKTFN RYNNMQMHMW GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH  240
PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK  300
HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKRRK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306805840.0
Expression AtlasAT1G08290-
AtGenExpressAT1G08290-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G08290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G08290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_172306.10.0WIP domain protein 3
SwissprotQ9SGD10.0ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLR0II760.0R0II76_9BRAS; Uncharacterized protein
STRINGAT1G08290.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
MalvidsOGEM23928237
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Sagasser M,Lu GH,Hahlbrock K,Weisshaar B
    A. thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins.
    Genes Dev., 2002. 16(1): p. 138-49
    [PMID:11782451]
  3. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  6. Appelhagen I, et al.
    Weird fingers: functional analysis of WIP domain proteins.
    FEBS Lett., 2010. 584(14): p. 3116-22
    [PMID:20541552]
  7. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  8. Zhou X,Graumann K,Evans DE,Meier I
    Novel plant SUN-KASH bridges are involved in RanGAP anchoring and nuclear shape determination.
    J. Cell Biol., 2012. 196(2): p. 203-11
    [PMID:22270916]
  9. Pulido P,Toledo-Ortiz G,Phillips MA,Wright LP,Rodr
    Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control.
    Plant Cell, 2013. 25(10): p. 4183-94
    [PMID:24104567]
  10. Zhou X,Groves NR,Meier I
    Plant nuclear shape is independently determined by the SUN-WIP-WIT2-myosin XI-i complex and CRWN1.
    Nucleus, 2015. 6(2): p. 144-53
    [PMID:25759303]