PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G03800.1
Common NameATERF10, ERF077, ERF10, ERF-10, F21M11.27
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 245aa    MW: 26392.5 Da    PI: 4.8365
Description ERF domain protein 10
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G03800.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1852101255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +gr++AeIrdp++   +kr++lg+f t eeAa+a++ a+ +++g
  AT1G03800.1  52 RYRGVRRRP-WGRYAAEIRDPVK---KKRVWLGSFNTGEEAARAYDSAAIRFRG 101
                  69*******.**********654...6************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3552115IPR001471AP2/ERF domain
PfamPF008473.1E-1352101IPR001471AP2/ERF domain
PROSITE profilePS5103224.47452109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-3052109IPR001471AP2/ERF domain
CDDcd000183.52E-3352109No hitNo description
SuperFamilySSF541712.55E-2252110IPR016177DNA-binding domain
PRINTSPR003674.8E-105364IPR001471AP2/ERF domain
PRINTSPR003674.8E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTTEKENVTT AVAVKDGGEK SKEVSDKGVK KRKNVTKALA VNDGGEKSKE VRYRGVRRRP  60
WGRYAAEIRD PVKKKRVWLG SFNTGEEAAR AYDSAAIRFR GSKATTNFPL IGYYGISSAT  120
PVNNNLSETV SDGNANLPLV GDDGNALASP VNNTLSETAR DGTLPSDCHD MLSPGVAEAV  180
AGFFLDLPEV IALKEELDRV CPDQFESIDM GLTIGPQTAV EEPETSSAVD CKLRMEPDLD  240
LNASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2148110164ATERF1
3gcc_A2e-2148110164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632KGVKKRK
25675RRRPWGRYAAEIRDPVKKKR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT1G03800
AtGenExpressAT1G03800
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-10). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G03800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDethylene
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G03800
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0476490.0AB047649.1 Arabidopsis thaliana AtERF10 gene for ERF domain protein 10, complete cds.
GenBankAC0030270.0AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY5608790.0AY560879.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g03800) mRNA, complete cds.
GenBankBT0290200.0BT029020.1 Arabidopsis thaliana At1g03800 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171876.11e-180ERF domain protein 10
SwissprotQ9ZWA20.0ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLA0A384KN671e-179A0A384KN67_ARATH; ERF10
TrEMBLQ08A591e-179Q08A59_ARATH; At1g03800
STRINGAT1G03800.11e-179(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ohta M,Matsui K,Hiratsu K,Shinshi H,Ohme-Takagi M
    Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.
    Plant Cell, 2001. 13(8): p. 1959-68
    [PMID:11487705]
  3. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  4. Jung J, et al.
    The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis.
    Planta, 2007. 225(3): p. 575-88
    [PMID:16937017]
  5. Chilley PM, et al.
    The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling.
    Plant Cell, 2006. 18(11): p. 3058-72
    [PMID:17138700]
  6. Mah
    Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome.
    Plant Mol. Biol., 2007. 64(6): p. 699-711
    [PMID:17551672]
  7. Zhuang J, et al.
    Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
    Biochem. Biophys. Res. Commun., 2008. 371(3): p. 468-74
    [PMID:18442469]
  8. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  9. Causier B,Ashworth M,Guo W,Davies B
    The TOPLESS interactome: a framework for gene repression in Arabidopsis.
    Plant Physiol., 2012. 158(1): p. 423-38
    [PMID:22065421]
  10. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  11. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]
  12. Riechmann JL,Meyerowitz EM
    The AP2/EREBP family of plant transcription factors.
    Biol. Chem., 1998. 379(6): p. 633-46
    [PMID:9687012]