PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G02250.1
Common Nameanac005, NAC005, T7I23.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 362aa    MW: 40801.6 Da    PI: 7.724
Description NAC domain containing protein 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G02250.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.61.2e-4041322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  p+GfrF+Ptd e+v+ yL++k  +++  +++evi++vdi++++PwdLp  +++k++++ wyfF ++++ky +g+r+ r+tksg+Wk+tg + ++++k 
  AT1G02250.1   4 PVGFRFRPTDGEIVDIYLRPKNLESNtSHVDEVISTVDICSFDPWDLPshSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKt 101
                  89*****************99665553788889**************96448999999**************************************98 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++e++g k++Lvf    ++ g+k+dW mhey++
  AT1G02250.1 102 gDREKIGEKRVLVFK---NHGGSKSDWAMHEYHA 132
                  88889*********7...78899*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-443151IPR003441NAC domain
PROSITE profilePS5100542.6423151IPR003441NAC domain
PfamPF023659.4E-224131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0005352anatomyxylem
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MANPVGFRFR PTDGEIVDIY LRPKNLESNT SHVDEVISTV DICSFDPWDL PSHSRMKTRD  60
QVWYFFGRKE NKYGKGDRQI RKTKSGFWKK TGVTMDIMRK TGDREKIGEK RVLVFKNHGG  120
SKSDWAMHEY HATFSSPNQI MTYTLCKVKF KGERREFSVA TGSGIKHTHS LIPPTNNSGV  180
LSVETEGSLF HSQESQNPSQ FSGFLDVDAL DRDFCNILSD DFKGFFNDDD EQSKIVSMQD  240
DRNNHTPQKP LTGVFSDHST DGSDSDPISA TTISIQTLST CPSFGSSNPL YQITDLQESP  300
NSIKLVSLAQ EVSKTPGTGI DNDAQGTEIG EHKLGQETIK NKRAGFFHRM IQKFVKKIHL  360
RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-20413116139Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO3341822350.0
Genevisible264149_at0.0
Expression AtlasAT1G02250-
AtGenExpressAT1G02250-
ATTED-IIAT1G02250-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00123DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G02250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G02250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934250.0AB493425.1 Arabidopsis thaliana At1g02250 mRNA for hypothetical protein, partial cds, clone: RAAt1g02250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171727.20.0NAC domain-containing protein 5
SwissprotO819140.0NAC5_ARATH; NAC domain-containing protein 5
TrEMBLD7KB641e-139D7KB64_ARALL; Predicted protein
STRINGAT1G02250.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Hass C, et al.
    The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
    EMBO J., 2004. 23(16): p. 3290-302
    [PMID:15282545]
  4. Zhao C,Craig JC,Petzold HE,Dickerman AW,Beers EP
    The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl.
    Plant Physiol., 2005. 138(2): p. 803-18
    [PMID:15923329]
  5. Ko JH,Yang SH,Park AH,Lerouxel O,Han KH
    ANAC012, a member of the plant-specific NAC transcription factor family, negatively regulates xylary fiber development in Arabidopsis thaliana.
    Plant J., 2007. 50(6): p. 1035-48
    [PMID:17565617]
  6. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  7. Zhao J, et al.
    ANAC005 is a membrane-associated transcription factor and regulates vascular development in Arabidopsis.
    J Integr Plant Biol, 2016. 58(5): p. 442-51
    [PMID:26178734]