PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G02230.1
Common NameANAC004, NAC004, T7I23.19
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 359aa    MW: 40896.4 Da    PI: 6.5151
Description NAC domain containing protein 4
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G02230.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.42.2e-4341322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  p+GfrF+P+dee+v++yL++k  +++  +++evi++vdi+++ePwdLp k ++k+++  wyfFs ++ ky++g++++r t+sg+Wk+tgk+ +v++k 
  AT1G02230.1   4 PVGFRFRPNDEEIVDHYLRPKNLDSDtSHVDEVISTVDICSFEPWDLPsKsMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKr 101
                  89******************9777664777889**************96347777888**************************************98 PP

          NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++e++g k++Lvf    +++g+ktdWvmhey++
  AT1G02230.1 102 gNREKIGEKRVLVFK---NRDGSKTDWVMHEYHA 132
                  77888*********7...78899*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.2993151IPR003441NAC domain
SuperFamilySSF1019413.66E-463151IPR003441NAC domain
PfamPF023651.8E-244131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMNPVGFRFR PNDEEIVDHY LRPKNLDSDT SHVDEVISTV DICSFEPWDL PSKSMIKSRD  60
GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTVMRK RGNREKIGEK RVLVFKNRDG  120
SKTDWVMHEY HATSLFPNQM MTYTVCKVEF KGEETEISSS STGSEIEQIH SLIPLVNSSG  180
GSEGSSFHSQ ELQNSSQSGV FANVQGESQI DDATTPIEEE WKTWLNNDGD EQRNIMFMQD  240
HRSDYTPLKS LTGVFSDDSS DDNDSDLISP KTNSIGTSST CASFASSNHQ IDQTQHSPDS  300
TVQLVSLTQE VSQGPGQVTV IREHKLGEES VKKKRASFVY RMIHRLVKKI HQCYSISRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-24413016138Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453349840.0
Expression AtlasAT1G02230-
AtGenExpressAT1G02230-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00122DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G02230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G02230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934240.0AB493424.1 Arabidopsis thaliana At1g02240 mRNA for hypothetical protein, partial cds, clone: RAAt1g02240.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171726.20.0NAC domain-containing protein 4
SwissprotO819130.0NAC4_ARATH; NAC domain-containing protein 4
TrEMBLD7KB640.0D7KB64_ARALL; Predicted protein
STRINGAT1G02230.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  3. Scheible WR, et al.
    Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
    Plant Physiol., 2004. 136(1): p. 2483-99
    [PMID:15375205]
  4. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]