PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G02210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 87aa    MW: 10246.7 Da    PI: 4.9513
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G02210.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.93.7e-1437158127
          NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyr 127
                  w+fFs+ + ++     +  +t+sgyWk+t ++++++ k    +g ++g k++Lvf + ++ +g+k+dWvmh y+
  AT1G02210.1   3 WFFFSCDEYNE-----EILKTNSGYWKETVSNTPIIGKwitsNGVKIGEKQVLVFQSYENINGSKSDWVMHVYQ 71 
                  88888876543.....3457899*************9999999999*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.048187IPR003441NAC domain
SuperFamilySSF1019414.84E-17285IPR003441NAC domain
PfamPF023653.0E-9371IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MVWFFFSCDE YNEEILKTNS GYWKETVSNT PIIGKWITSN GVKIGEKQVL VFQSYENING  60
SKSDWVMHVY QPTFLPPNQV IFRIYDV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183789331e-148
Expression AtlasAT1G02210-
AtGenExpressAT1G02210-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G02210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G02210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0648791e-146AC064879.3 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete sequence.
GenBankCP0026841e-146CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankBT0293541e-146BT029354.1 Arabidopsis thaliana At1g02210 mRNA, complete cds.
GenBankU899591e-146U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171724.13e-59No Apical Meristem domain-containing protein
SwissprotO819137e-16NAC4_ARATH; NAC domain-containing protein 4
TrEMBLQ3E7L23e-59Q3E7L2_ARATH; At1g02210
STRINGAT1G02210.19e-59(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1990645
Publications ? help Back to Top
  1. Nakano T, et al.
    Identification of genes of the plant-specific transcription-factor families cooperatively regulated by ethylene and jasmonate in Arabidopsis thaliana.
    J. Plant Res., 2006. 119(4): p. 407-13
    [PMID:16820983]