PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G01010.1
Common NameANAC001, NAC001, NTL10, T25K16.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 429aa    MW: 49425.8 Da    PI: 4.8937
Description NAC domain containing protein 1
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G01010.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.12.1e-3751383128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                  +Gf F+P+deelv +yL++k+eg++ +  ev i+ev+i++++Pw+L+ + k+k+++  wyfFs+r+++  +g+r++r+t sg Wk tg++ ev+++  
  AT1G01010.1   5 VGFGFRPNDEELVGHYLRNKIEGNTSRDVEVaISEVNICSYDPWNLRfQsKYKSRDAMWYFFSRRENN--KGNRQSRTTVSGKWKLTGESVEVKDQwg 100
                  7************************6666666**************85247788889*******9886..588**********************999 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + ++g k++Lvf +gr p+ +k+dWv+he++ 
  AT1G01010.1 101 fcsegFRGKIGHKRVLVFLDGRYPDKTKSDWVIHEFHY 138
                  988775567***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.5183156IPR003441NAC domain
SuperFamilySSF1019414.84E-375156IPR003441NAC domain
PfamPF023658.2E-205137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001185developmental stageplant embryo globular stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEDQVGFGFR PNDEELVGHY LRNKIEGNTS RDVEVAISEV NICSYDPWNL RFQSKYKSRD  60
AMWYFFSRRE NNKGNRQSRT TVSGKWKLTG ESVEVKDQWG FCSEGFRGKI GHKRVLVFLD  120
GRYPDKTKSD WVIHEFHYDL LPEHQRTYVI CRLEYKGDDA DILSAYAIDP TPAFVPNMTS  180
SAGSVVNQSR QRNSGSYNTY SEYDSANHGQ QFNENSNIMQ QQPLQGSFNP LLEYDFANHG  240
GQWLSDYIDL QQQVPYLAPY ENESEMIWKH VIEENFEFLV DERTSMQQHY SDHRPKKPVS  300
GVLPDDSSDT ETGSMIFEDT SSSTDSVGSS DEPGHTRIDD IPSLNIIEPL HNYKAQEQPK  360
QQSKEKVISS QKSECEWKMA EDSIKIPPST NTVKQSWIVL ENAQWNYLKN MIIGVLLFIS  420
VISWIILVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-18613718139Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO306778650.0
Genevisible261585_at0.0
Expression AtlasAT1G01010-
AtGenExpressAT1G01010-
ATTED-IIAT1G01010-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G01010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q0WV96
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G01010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0011150.0BT001115.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
GenBankAF4398340.0AF439834.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_171609.10.0NAC domain-containing protein 1
SwissprotQ0WV960.0NAC1_ARATH; NAC domain-containing protein 1
TrEMBLD7KQC40.0D7KQC4_ARALL; ANAC001
STRINGAT1G01010.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Hu W,Wang Y,Bowers C,Ma H
    Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis.
    Plant Mol. Biol., 2003. 53(4): p. 545-63
    [PMID:15010618]
  4. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]
  5. Avivi Y, et al.
    Reorganization of specific chromosomal domains and activation of silent genes in plant cells acquiring pluripotentiality.
    Dev. Dyn., 2004. 230(1): p. 12-22
    [PMID:15108305]
  6. Berardini TZ, et al.
    Functional annotation of the Arabidopsis genome using controlled vocabularies.
    Plant Physiol., 2004. 135(2): p. 745-55
    [PMID:15173566]
  7. Hass C, et al.
    The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
    EMBO J., 2004. 23(16): p. 3290-302
    [PMID:15282545]
  8. Becerra C,Puigdomenech P,Vicient CM
    Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development.
    BMC Genomics, 2006. 7: p. 38
    [PMID:16504176]
  9. Kuo HF,Olsen KM,Richards EJ
    Natural variation in a subtelomeric region of Arabidopsis: implications for the genomic dynamics of a chromosome end.
    Genetics, 2006. 173(1): p. 401-17
    [PMID:16547105]
  10. Rangwala SH, et al.
    Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon.
    PLoS Genet., 2006. 2(3): p. e36
    [PMID:16552445]
  11. Knowles DG,McLysaght A
    High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes.
    Mol. Biol. Evol., 2006. 23(8): p. 1548-57
    [PMID:16720694]
  12. Kim SY, et al.
    Exploring membrane-associated NAC transcription factors in Arabidopsis: implications for membrane biology in genome regulation.
    Nucleic Acids Res., 2007. 35(1): p. 203-13
    [PMID:17158162]
  13. Rangwala SH,Richards EJ
    Differential epigenetic regulation within an Arabidopsis retroposon family.
    Genetics, 2007. 176(1): p. 151-60
    [PMID:17339215]
  14. Filatov V, et al.
    A quantitative trait loci analysis of zinc hyperaccumulation in Arabidopsis halleri.
    New Phytol., 2007. 174(3): p. 580-90
    [PMID:17447913]
  15. Grafi G, et al.
    Histone methylation controls telomerase-independent telomere lengthening in cells undergoing dedifferentiation.
    Dev. Biol., 2007. 306(2): p. 838-46
    [PMID:17448460]
  16. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  17. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  18. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]