PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33413
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 442aa    MW: 48820.9 Da    PI: 9.0203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33413genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.00134163123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C++C k F++   L  H+++H
  EMT33413 41 HVCNKCYKNFPSGRALGGHMSLH 63
              79******************998 PP

2zf-C2H219.72.3e-06103124223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
               +C+ C+k+Fs  ++L++H+r H
  EMT33413 103 QCQLCSKVFSACDSLRKHMREH 124
               7*******************99 PP

3zf-C2H215.16.5e-05356378123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C+ CgksF + s L  H+r H
  EMT33413 356 HQCNACGKSFGSGSALGGHMRWH 378
               79*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.54163IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-84165IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596102129IPR007087Zinc finger, C2H2
SMARTSM003550.034102124IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.09E-10103124No hitNo description
Gene3DG3DSA:3.30.160.600.001103125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-5103126IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-10351378No hitNo description
Gene3DG3DSA:3.30.160.606.7E-6354378IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-7355379IPR007087Zinc finger, C2H2
SMARTSM003551.9356378IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803356383IPR007087Zinc finger, C2H2
PROSITE patternPS000280358378IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVGQTRGLSG QHARTGPFGH LWRQATTCFT DMAPRGRPPK HVCNKCYKNF PSGRALGGHM  60
SLHWRKVKQP KGTPSPPATV VDLNVSLLSP SDEETFLRSS GTQCQLCSKV FSACDSLRKH  120
MREHREKNVL SKPAEEAAGL MEARVIAGGG CNVLLSPVKR KRSKRGVPPL KFNEMDAAAS  180
LLLLSEHSSK ISAYEDCYTE VMDSFAPNVS KDVKLNAFDH QLVRSAEFKK PKGCKCSAYD  240
IFYGQCVKDN NLIPNVAKEK TSIPNIAKNS ACEDCFGQCE KDSSLIPNVE LKERSLIANV  300
PEKDNTLISI VLEEVELNVL DHVLAGDAEL RKKQRTDNSV EMKRADLSAA VKVKRHQCNA  360
CGKSFGSGSA LGGHMRWHLP RSNDRRHGFA ESPDSVAMKE QKQKLELDTK FLDLQLPGLT  420
DITIFSGLKS EPEPWRVASS VH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.10.0uncharacterized protein LOC109750291
TrEMBLN1R4D10.0N1R4D1_AEGTA; Uncharacterized protein
STRINGEMT334130.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.18e-07C2H2-like zinc finger protein