PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32582
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 166aa    MW: 17150.4 Da    PI: 11.3567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32582genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184792352
       AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
              y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  EMT32582 47 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 92
              9****998.**********843...6*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-124592IPR001471AP2/ERF domain
SMARTSM003801.4E-3546109IPR001471AP2/ERF domain
PROSITE profilePS5103223.03746103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3146104IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2146104IPR016177DNA-binding domain
PRINTSPR003671.9E-104758IPR001471AP2/ERF domain
CDDcd000182.76E-1947105No hitNo description
PRINTSPR003671.9E-106985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPDSELNSPA SSSASPPPSP TTARGGVLEK RGRDAGGNGA GDRHPAYRGV RMRAWGKWVS  60
EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVVKGPAAVL NFPELASSLP RPASAAPHDV  120
QAAAARAAAM DPAPVSAGVS TEPMPAAATS PPVAPRTDVE PGRRRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2234103272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036829e-79AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149629e-79AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193635.12e-99ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD36e-50DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM8CXZ61e-110M8CXZ6_AEGTA; Dehydration-responsive element-binding protein 3
STRINGEMT325821e-111(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,B├╝low L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]