PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 213aa    MW: 23127.5 Da    PI: 9.6758
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.5e-163485255
       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr++   grWv+e+r+    g +  r +lg+f tae+Aa+a++aa ++l g
  EMT32428 34 LYRGVRQRGPAGRWVCEVRVL---GmRGSRLWLGTFVTAEMAARAHDAAVLALSG 85
              69***************9994...6555*********************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.43E-223395No hitNo description
PfamPF008471.6E-103384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-283495IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-183495IPR016177DNA-binding domain
PROSITE profilePS5103219.8093493IPR001471AP2/ERF domain
SMARTSM003805.6E-223499IPR001471AP2/ERF domain
PRINTSPR003672.3E-53546IPR001471AP2/ERF domain
PRINTSPR003672.3E-55975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPSGQQEQRH RTVRSEPPKR PAGRTKFHET RHPLYRGVRQ RGPAGRWVCE VRVLGMRGSR  60
LWLGTFVTAE MAARAHDAAV LALSGRKACL NFADSAWRML PVLAAGSFGF GSAREIKTAV  120
AVAVLAFQRQ KIVLPVACPA AEPAVVPKSG ALFSMSSGDL LELDDEQWFG GMVAGSYYES  180
LAQGMLVEPP DAGAWREQSE HSGVAETQTP LWG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9872120.0JN987212.1 Triticum aestivum AP2 domain CBF protein (CBFIVd) mRNA, CBFIVd-26.1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167743.11e-154dehydration-responsive element-binding protein 1B-like
SwissprotQ3T5N46e-51DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
SwissprotQ8GUW48e-51DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLA0A453LD241e-153A0A453LD24_AEGTS; Uncharacterized protein
TrEMBLK9M7H31e-153K9M7H3_WHEAT; AP2 domain CBF protein
TrEMBLM8CE131e-153M8CE13_AEGTA; Dehydration-responsive element-binding protein 1B
STRINGEMT324281e-154(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-35C-repeat/DRE binding factor 2