PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32188
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 151aa    MW: 16280.2 Da    PI: 10.1639
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32188genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07110130425
               ---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
               ++C+ff++ G C yG++C++ H
  EMT32188 110 RPCKFFLA-GDCTYGEKCRYPH 130
               79******.**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023108132IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4110130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4110130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGTD GGVRHKVPDR PCKFFLAGDC  120
TYGEKCRYPH TYCMSNSITL LTPLQGHEKA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594520.0AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17.
GenBankAK3627330.0AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162465.11e-107zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP56e-67C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A453P9X11e-106A0A453P9X1_AEGTS; Uncharacterized protein
TrEMBLA0A453PA351e-106A0A453PA35_AEGTS; Uncharacterized protein
TrEMBLA0A453PA401e-106A0A453PA40_AEGTS; Uncharacterized protein
TrEMBLM8CDG21e-107M8CDG2_AEGTA; Uncharacterized protein
STRINGEMT321881e-108(Aegilops tauschii)
STRINGTraes_6DL_F4FBB448F.21e-106(Triticum aestivum)
STRINGTRIUR3_29037-P11e-103(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.17e-24zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]