PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 110aa    MW: 11947.5 Da    PI: 10.2226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32000genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166890123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg  F     L  H+r+H
  EMT32000 68 HQCHVCGLEFEMGQALGGHMRRH 90
              79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-81640IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-61690No hitNo description
SMARTSM00355281638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
PfamPF139123.0E-116793IPR007087Zinc finger, C2H2
SMARTSM003550.246890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6816895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MADRSKKQRR GADGEFVCKT CSRAFPSFQA PGGHRTSHLR ARHGLALGLT GGSDQPATNK  60
ATDQKQAHQC HVCGLEFEMG QALGGHMRRH REQEAATTAQ APPVLLQLFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2535541e-180EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198422.12e-74zinc finger protein ZAT8-like
RefseqXP_020199617.12e-74zinc finger protein ZAT8-like
SwissprotQ9LX857e-20ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM8C3W92e-74M8C3W9_AEGTA; Zinc finger protein 1
STRINGEMT320003e-75(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-22C2H2 family protein