PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31999
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 161aa    MW: 17274.4 Da    PI: 6.7896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31999genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.001792114123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg  F     L  H+r H
  EMT31999  92 HECHICGLGFEMGQALGGHMRGH 114
               79******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.14264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8894269IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-742114No hitNo description
PfamPF139121.4E-94266IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003552.292114IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.59892119IPR007087Zinc finger, C2H2
PfamPF139121.4E-992117IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGVGMKRARE EEPVSLALAL TTDSAASSPT SAHSASSGEG EFVCKTCSRA FATFQALGGH  60
RTSHLRGRHG LELGVGVARA IKERKRQEEK QHECHICGLG FEMGQALGGH MRGHREEMAL  120
RGGGDDGDQW VWRGVGVLDQ EAVGHQAAAN YEPPVLLELF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4082241e-171EU408224.1 Triticum aestivum C2H2 zinc finger protein (ZFP34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.11e-106zinc finger protein ZAT8-like
TrEMBLM8CC841e-113M8CC84_AEGTA; Uncharacterized protein
STRINGEMT319991e-113(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-18C2H2 family protein