PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31995
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 170aa    MW: 18333.9 Da    PI: 10.9171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31995genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000865981123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cg+ F +   L  H  +H
  EMT31995 59 FVCKTCGRAFASFQALGGHRTSH 81
              89*********999998888777 PP

2zf-C2H215.45.4e-05109131123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg+ F +   L  H+r+H
  EMT31995 109 HECNICGMGFETGQALGGHMRRH 131
               79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.345981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6585986IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-959131No hitNo description
PfamPF139128.2E-105983IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4107134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.023109131IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-10109134IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGAGMKRSRD EEVLSLALAL TTDSSTSFTT SADSAGSPAK KARRRTRGAV VATSGEGEFV  60
CKTCGRAFAS FQALGGHRTS HLRGRHELEL GVGVAKAIRE RRRRENKQHE CNICGMGFET  120
GQALGGHMRR HREEMALRGG HDGVALLPDQ VVTGHQATTK QPPVLLKLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198428.11e-120zinc finger protein ZAT12-like
TrEMBLA0A453M9571e-119A0A453M957_AEGTS; Uncharacterized protein
TrEMBLM8C3W51e-119M8C3W5_AEGTA; Zinc finger protein 382
STRINGEMT319951e-120(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.19e-22C2H2 family protein