PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 177aa    MW: 19279.1 Da    PI: 11.5118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31993genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05109131123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++Cg+ F +   L  H+r+H
  EMT31993 109 HECSICGMGFETGQALGGHMRRH 131
               78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-859131No hitNo description
PfamPF139125.9E-85983IPR007087Zinc finger, C2H2
SMARTSM003550.485981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3885986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-4107134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.4E-11109134IPR007087Zinc finger, C2H2
SMARTSM003550.019109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGAGMKRARD KEVLSLALAL TTDSPTPSTT SADSAGSPAK KSRRRARGAV VATSGEGEFV  60
CKTCGRAFVS FRALGGHRTS HLRGRHELEL GVGIARAIRE RRRRENKQHE CSICGMGFET  120
GQALGGHMRR HREEMALRGR IDDDQWVWRG VALLPGQVVT GHQASANQPP VLLKLFV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198430.11e-126zinc finger protein ZAT12-like
TrEMBLM8CCW61e-125M8CCW6_AEGTA; Uncharacterized protein
STRINGEMT319931e-126(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-19C2H2 family protein