PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31981
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 197aa    MW: 21790.8 Da    PI: 7.9016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31981genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-10127151126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               +kte C+ +   G C+yG+rC+FaHg
  EMT31981 127 QKTEMCNKWEG-GACSYGGRCRFAHG 151
               59*******88.*************9 PP

2zf-CCCH201.2e-06164190127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               ykt +C+ fa+   C+yG rC+F H+p
  EMT31981 164 YKTLPCQMFAAASGCPYGHRCHFRHSP 190
               9************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-13123158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779126153IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6126152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8127156IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6128151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-10159190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-7160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831163191IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4163190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MHLSLLLEEL EADQGKRAIA PAPTPPPKPT EEVAARGGAP KSISIRSKCY LSQAKQPRGE  60
AEAQRLRVRP PPAIEMVKST KPAILDELCC SFEPTQCWQL LDEQAGEDEA KGDGEVVELE  120
AYRQGTQKTE MCNKWEGGAC SYGGRCRFAH GLQEMRPVIR HPRYKTLPCQ MFAAASGCPY  180
GHRCHFRHSP APTAQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A1e-171281911175Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186684e-78AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372674e-78AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149594e-78AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126114e-78CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.12e-96putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN88e-62C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLM8D6D41e-143M8D6D4_AEGTA; Putative zinc finger CCCH domain-containing protein 21
STRINGEMT319811e-143(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-38C3H family protein